RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 LSG1Q9H089 658 aaKnown RBP19.24■□□□□ 0.67
CHMP1A-209ENST00000550872 RNF41Q9H4P4 317 aaPredicted RBP19.24■□□□□ 0.67
CHMP1A-209ENST00000550872 A0A0G2JLL6 359 aaPredicted RBP19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 IGF2BP3O00425 579 aaKnown RBP eCLIP19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 ORC4O43929 436 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 RANBP6O60518 1105 aaKnown RBP19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 FGRP09769 529 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 TSPY3P0CV98 308 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 TSPY8P0CW00 308 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 HMGCS2P54868 508 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 BACE1P56817 501 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 TFAP4Q01664 338 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 FAM47AQ5JRC9 791 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 FASTKD5Q7L8L6 764 aaKnown RBP19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 PRRT2Q7Z6L0 340 aaPredicted RBP19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 TBC1D10CQ8IV04 446 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 FEZ1Q99689 392 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 NBPF3Q9H094 633 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 KANSL2Q9H9L4 492 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 RNF186Q9NXI6 227 aa19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 RBM8AQ9Y5S9 174 aaKnown RBP19.23■□□□□ 0.67
CHMP1A-209ENST00000550872 C19orf81C9J6K1 198 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 TRPA1O75762 1119 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 ALDH1A1P00352 501 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 ICA1Q05084 483 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 MTMR2Q13614 643 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 CLEC10AQ8IUN9 316 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 ACER1Q8TDN7 264 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 STAG1Q8WVM7 1258 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 TMOD4Q9NZQ9 345 aa19.22■□□□□ 0.67
CHMP1A-209ENST00000550872 TSPY2A6NKD2 308 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 BTBD19C9JJ37 291 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 PCP11498 1178 aaKnown RBP19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 ATP2B2Q01814 1243 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 MOGSQ13724 837 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 SH3D19Q5HYK7 790 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 FAM43AQ8N2R8 423 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 NEDD1Q8NHV4 660 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 ARHGEF10LQ9HCE6 1279 aa19.21■□□□□ 0.67
CHMP1A-209ENST00000550872 CA12O43570 354 aa19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 CYP21A2P08686 494 aa19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 EEF2P13639 858 aaKnown RBP19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 ZYXQ15942 572 aaKnown RBP19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 USP17L2Q6R6M4 530 aa19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 ANKRD23Q86SG2 305 aa19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 PROCA1Q8NCQ7 364 aaPredicted RBP19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 KIAA1683Q9H0B3 1180 aa19.2■□□□□ 0.66
CHMP1A-209ENST00000550872 A0A1W2PRG0 241 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 USP14P54578 494 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 DGKZQ13574 1117 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 GPAT2Q6NUI2 795 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 SIAH1Q8IUQ4 282 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 ESR2Q92731 530 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 SAGE1Q9NXZ1 904 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 PTPRFP10586 1907 aa19.19■□□□□ 0.66
CHMP1A-209ENST00000550872 IGKV6D-41A0A0C4DH26 115 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 PDHXO00330 501 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 TAF1CQ15572 869 aaPredicted RBP19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 CEP95Q96GE4 821 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 SH2D4AQ9H788 454 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 EMILIN3Q9NT22 766 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 MTMR4Q9NYA4 1195 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 NYAP2Q9P242 653 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 CLIP2Q9UDT6 1046 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 TSKSQ9UJT2 592 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 AGTPBP1Q9UPW5 1226 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 TMX2Q9Y320 296 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 NEDD4P46934 1319 aa19.18■□□□□ 0.66
CHMP1A-209ENST00000550872 LAMA4Q16363 1823 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 REC8O95072 547 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 TBC1D8O95759 1140 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 TREML2Q5T2D2 321 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 KRT23Q9C075 422 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 CNNM2Q9H8M5 875 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 ZCCHC17Q9NP64 241 aaKnown RBP19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 PLIN4Q96Q06 1357 aa19.17■□□□□ 0.66
CHMP1A-209ENST00000550872 B4E1Z4 1266 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 SLC27A2O14975 620 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 KDM4AO75164 1064 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 TTLL1O95922 423 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 TRDNQ13061 729 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 NECTIN1Q15223 517 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 PPP4R3BQ5MIZ7 849 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 CREB3L3Q68CJ9 461 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 C12orf42Q96LP6 360 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 ZFYVE28Q9HCC9 887 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 IL17RBQ9NRM6 502 aa19.16■□□□□ 0.66
CHMP1A-209ENST00000550872 GREB1LQ9C091 1923 aaPredicted RBP19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 E7EWF7 191 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 RAD21O60216 631 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 NMT2O60551 498 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 NT5C2P49902 561 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 PABPC4Q13310 644 aaKnown RBP eCLIP19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 CRHR2Q13324 411 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 RNF20Q5VTR2 975 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 NKX2-3Q8TAU0 364 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 ABHD8Q96I13 439 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 VCPKMTQ9H867 229 aa19.15■□□□□ 0.66
CHMP1A-209ENST00000550872 TCP11L1Q9NUJ3 509 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms