RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 LRRC2Q9BYS8 371 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 CALCOCO1Q9P1Z2 691 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 COL4A1P02462 1669 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 ADAMTSL1Q8N6G6 1762 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 PXDNLA1KZ92 1463 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 FSHRP23945 695 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 PDE1AP54750 535 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 ZNF445P59923 1031 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 ALDH1L2Q3SY69 923 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 RAB11FIP4Q86YS3 637 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 CERS3Q8IU89 383 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 CEP57L1Q8IYX8 460 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 ZCRB1Q8TBF4 217 aaKnown RBP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 PIK3R5Q8WYR1 880 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 GTPBP4Q9BZE4 634 aaKnown RBP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 M0R2N6 131 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 FAM13AO94988 1023 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 ANXA1P04083 346 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 TPM1P09493 284 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 ZSCAN22P10073 491 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 SETQ01105 290 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 LRMPQ12912 555 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 CCDC30Q5VVM6 783 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 NFXL1Q6ZNB6 911 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 DEFB132Q7Z7B7 95 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 TRMT44Q8IYL2 757 aaKnown RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 CCDC8Q9H0W5 538 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 TLL2Q9Y6L7 1015 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 IBTKQ9P2D0 1353 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 ERVV-2B6SEH9 535 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 INHAP05111 366 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 CCT2P78371 535 aaKnown RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 ZNF827Q17R98 1081 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 SLC27A3Q5K4L6 730 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 CEP85Q6P2H3 762 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 TMC6Q7Z403 805 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 CPLX3Q8WVH0 158 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 SRRTQ9BXP5 876 aaKnown RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 PPP1R12BO60237 982 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 CCT4P50991 539 aaKnown RBP6.34□□□□□ -1.39
LIMA1-203ENST00000547825 HSP90AB3PQ58FF7 597 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 TAF3Q5VWG9 929 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 OLFM4Q6UX06 510 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 C10orf67Q8IYJ2 551 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 TSPYL1Q9H0U9 437 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 DCTPP1Q9H773 170 aa6.34□□□□□ -1.39
LIMA1-203ENST00000547825 PNPLA7Q6ZV29 1317 aa6.34□□□□□ -1.4
LIMA1-203ENST00000547825 RPAP1Q9BWH6 1393 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 PHACTR2O75167 634 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 TRIM37O94972 964 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 ADD1P35611 737 aaKnown RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 NAP1L1P55209 391 aaKnown RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 TRIM29Q14134 588 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 PIBF1Q8WXW3 757 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 CCDC34Q96HJ3 373 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 SRCIN1Q9C0H9 1055 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 DNAI1Q9UI46 699 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 NDUFB5O43674 189 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 SYT1P21579 422 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 NEXNQ0ZGT2 675 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 HSP90AB4PQ58FF6 505 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 CPLX2Q6PUV4 134 aaKnown RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 LRP10Q7Z4F1 713 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 SLC9A9Q8IVB4 645 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 ERCC4Q92889 916 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 PRKD2Q9BZL6 878 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 NIF3L1Q9GZT8 377 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 CENPHQ9H3R5 247 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 HDAC5Q9UQL6 1122 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 ARAP2Q8WZ64 1704 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 EXOC5O00471 708 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 IPO7O95373 1038 aaKnown RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 EVA1CP58658 441 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 FANCCQ00597 558 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 SNW1Q13573 536 aaKnown RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 UVSSAQ2YD98 709 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 RALYLQ86SE5 291 aaKnown RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 USHBP1Q8N6Y0 703 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 CAGE1Q8TC20 777 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 PIGBQ92521 554 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 ESYT1Q9BSJ8 1104 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 C2orf49Q9BVC5 232 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 PARP3Q9Y6F1 533 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-203ENST00000547825 MYH15Q9Y2K3 1946 aa6.33□□□□□ -1.4
LIMA1-203ENST00000547825 A6NHS1 94 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 SCAMP3O14828 347 aaKnown RBP6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ZNF500O60304 480 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-203ENST00000547825 GRM5P41594 1212 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 TYRO3Q06418 890 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 TRIM32Q13049 653 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 ATG3Q9NT62 314 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 USP16Q9Y5T5 823 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 RIC1Q4ADV7 1423 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 C10orf71Q711Q0 1435 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 POLR3DP05423 398 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-203ENST00000547825 TRDNQ13061 729 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 CC2D2BQ6DHV5 1058 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 KLHL10Q6JEL2 608 aa6.32□□□□□ -1.4
LIMA1-203ENST00000547825 COL26A1Q96A83 441 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms