RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 HLA-DOAP06340 250 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 USP5P45974 858 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 FXR1P51114 621 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP28-215ENST00000545608 IRX3P78415 501 aaPredicted RBP10.31□□□□□ -0.76
USP28-215ENST00000545608 CAMK2BQ13554 666 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 ERC1Q8IUD2 1116 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 RHPN1Q8TCX5 695 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 TXNRD2Q9NNW7 524 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 PAK6Q9NQU5 681 aaPredicted RBP10.31□□□□□ -0.76
USP28-215ENST00000545608 EMILIN3Q9NT22 766 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 GINM1Q9NU53 330 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 SIPA1L1O43166 1804 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 TTLL13PA6NNM8 815 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 GH2P01242 217 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 MAP3K12Q12852 859 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 TRIM32Q13049 653 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 Q3C1V9 767 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 TATDN1Q6P1N9 297 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 POTEEQ6S8J3 1075 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 SIRT2Q8IXJ6 389 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 RIOK1Q9BRS2 568 aaKnown RBP10.3□□□□□ -0.76
USP28-215ENST00000545608 HTATIP2Q9BUP3 242 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 RBPJLQ9UBG7 517 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 MGAMO43451 1857 aa10.3□□□□□ -0.76
USP28-215ENST00000545608 APBB1O00213 710 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 CYP2B6P20813 491 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 PLCD1P51178 756 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 HERVK_113P62684 666 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 HSP90AB4PQ58FF6 505 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 USP17L2Q6R6M4 530 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 CERS3Q8IU89 383 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 GPRC5AQ8NFJ5 357 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP28-215ENST00000545608 EHD4Q9H223 541 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 SERPINB13Q9UIV8 391 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 COG6Q9Y2V7 657 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 DOCK3Q8IZD9 2030 aa10.29□□□□□ -0.76
USP28-215ENST00000545608 HMGCRP04035 888 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 EVX2Q03828 476 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 ZYXQ15942 572 aaKnown RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 CERKLQ49MI3 558 aaPredicted RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 TTC6Q86TZ1 520 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 RPAP2Q8IXW5 612 aaPredicted RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 CLASRPQ8N2M8 674 aaKnown RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 ACER1Q8TDN7 264 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 DIS3LQ8TF46 1054 aaKnown RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 TRIB2Q92519 343 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 KIF1BPQ96EK5 621 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 EDC3Q96F86 508 aaKnown RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 PAWRQ96IZ0 340 aaKnown RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 PAGR1Q9BTK6 254 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 BCL11AQ9H165 835 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 PORCNQ9H237 461 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 ZBTB40Q9NUA8 1239 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 RBM27Q9P2N5 1060 aaKnown RBP10.28□□□□□ -0.76
USP28-215ENST00000545608 LOC285556D6RIA3 1793 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 MAST2Q6P0Q8 1798 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 RPTORQ8N122 1335 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 CENPFP49454 3210 aa10.28□□□□□ -0.76
USP28-215ENST00000545608 MYO5AQ9Y4I1 1855 aaKnown RBP10.27□□□□□ -0.76
USP28-215ENST00000545608 MKI67P46013 3256 aaKnown RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 MAGEB6P1A0A0J9YX57 407 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 GOLIM4O00461 696 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 CNMDO75829 334 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 POLR3DP05423 398 aaPredicted RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 MS4A1P11836 297 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 PDE6AP16499 860 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 CAPN2P17655 700 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 GUCY1A2P33402 732 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 SHMT1P34896 483 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 ERVK-9P63128 1117 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 ERVK-24P63145 666 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 GABPAQ06546 454 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 RAB3GAP1Q15042 981 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 TTF1Q15361 905 aaPredicted RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 ABCB5Q2M3G0 1257 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 PPP1R15BQ5SWA1 713 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 SLC9C2Q5TAH2 1124 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 TMED8Q6PL24 325 aaPredicted RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.27□□□□□ -0.77
USP28-215ENST00000545608 USP6NLQ92738 828 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 C12orf42Q96LP6 360 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 DNAJC2Q99543 621 aaKnown RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 NUDT12Q9BQG2 462 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 HMX1Q9NP08 348 aaPredicted RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 GPHNQ9NQX3 736 aaPredicted RBP10.27□□□□□ -0.77
USP28-215ENST00000545608 NR2E3Q9Y5X4 410 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 ATAD5Q96QE3 1844 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 ZNF532Q9HCE3 1301 aa10.27□□□□□ -0.77
USP28-215ENST00000545608 BRCA2P51587 3418 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 CEP290O15078 2479 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 TCRBV5S4A2TA0A5A2 114 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L15C9J2P7 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L13C9JLJ4 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L11C9JVI0 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L18D6R9N7 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L22D6RA61 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L17D6RBQ6 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L19D6RCP7 530 aa10.26□□□□□ -0.77
USP28-215ENST00000545608 USP17L20D6RJB6 530 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms