RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CFAP45Q9UL16 551 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 OTOFQ9HC10 1997 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 FZD9O00144 591 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 ERLIN1O75477 346 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 SMC2O95347 1197 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 BDNFP23560 247 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 GPTP24298 496 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 ATP8B2P98198 1209 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 TRIM65Q6PJ69 517 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 HDXQ7Z353 690 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 CEP57L1Q8IYX8 460 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 OTUD7AQ8TE49 926 aaPredicted RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 LEO1Q8WVC0 666 aaPredicted RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 RUFY2Q8WXA3 655 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 CHMP4CQ96CF2 233 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 BICC1Q9H694 974 aaKnown RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 GREM2Q9H772 168 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 PLSCR2Q9NRY7 297 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 DACT1Q9NYF0 836 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 TRIM66O15016 1216 aa6□□□□□ -1.45
USP28-213ENST00000544967 TCF3P15923 654 aa6□□□□□ -1.45
USP28-213ENST00000544967 LIG1P18858 919 aa6□□□□□ -1.45
USP28-213ENST00000544967 TXLNAP40222 546 aa6□□□□□ -1.45
USP28-213ENST00000544967 C11orf91Q3C1V1 193 aa6□□□□□ -1.45
USP28-213ENST00000544967 CT47A1Q5JQC4 288 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 UBE3BQ7Z3V4 1068 aa6□□□□□ -1.45
USP28-213ENST00000544967 ANKRD20A12PQ8NF67 263 aa6□□□□□ -1.45
USP28-213ENST00000544967 CTCFLQ8NI51 663 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 CXorf38Q8TB03 319 aa6□□□□□ -1.45
USP28-213ENST00000544967 GOLGA1Q92805 767 aa6□□□□□ -1.45
USP28-213ENST00000544967 MEIS3Q99687 375 aa6□□□□□ -1.45
USP28-213ENST00000544967 LCMT1Q9UIC8 334 aa6□□□□□ -1.45
USP28-213ENST00000544967 SALL1Q9NSC2 1324 aa6□□□□□ -1.45
USP28-213ENST00000544967 IKBKBO14920 756 aa6□□□□□ -1.45
USP28-213ENST00000544967 PPP1R12AO14974 1030 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 SASH3O75995 380 aa6□□□□□ -1.45
USP28-213ENST00000544967 CHRNA5P30532 468 aa6□□□□□ -1.45
USP28-213ENST00000544967 AARSP49588 968 aaKnown RBP eCLIP6□□□□□ -1.45
USP28-213ENST00000544967 APOBRQ0VD83 1088 aa6□□□□□ -1.45
USP28-213ENST00000544967 MCM6Q14566 821 aa6□□□□□ -1.45
USP28-213ENST00000544967 DHX40Q8IX18 779 aaKnown RBP6□□□□□ -1.45
USP28-213ENST00000544967 RNF25Q96BH1 459 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 CDC5LQ99459 802 aaKnown RBP6□□□□□ -1.45
USP28-213ENST00000544967 METTL14Q9HCE5 456 aaKnown RBP6□□□□□ -1.45
USP28-213ENST00000544967 LEMD3Q9Y2U8 911 aa6□□□□□ -1.45
USP28-213ENST00000544967 MRFAP1Q9Y605 127 aa6□□□□□ -1.45
USP28-213ENST00000544967 XDHP47989 1333 aa6□□□□□ -1.45
USP28-213ENST00000544967 RFX7Q2KHR2 1363 aa6□□□□□ -1.45
USP28-213ENST00000544967 NAV1Q8NEY1 1877 aa6□□□□□ -1.45
USP28-213ENST00000544967 GOLGA6L4A6NEF3 574 aa6□□□□□ -1.45
USP28-213ENST00000544967 CBFA2T2O43439 604 aa6□□□□□ -1.45
USP28-213ENST00000544967 SHOX2O60902 331 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 IL1R1P14778 569 aa6□□□□□ -1.45
USP28-213ENST00000544967 SFPQP23246 707 aaKnown RBP eCLIP6□□□□□ -1.45
USP28-213ENST00000544967 PSMA5P28066 241 aa6□□□□□ -1.45
USP28-213ENST00000544967 CACTIN-AS1Q8N1I8 211 aa6□□□□□ -1.45
USP28-213ENST00000544967 MICALL1Q8N3F8 863 aa6□□□□□ -1.45
USP28-213ENST00000544967 SUPT20HQ8NEM7 779 aa6□□□□□ -1.45
USP28-213ENST00000544967 CELF1Q92879 486 aaKnown RBP6□□□□□ -1.45
USP28-213ENST00000544967 ERCC4Q92889 916 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 MAGEC2Q9UBF1 373 aaPredicted RBP6□□□□□ -1.45
USP28-213ENST00000544967 A0A0G2JLW4 131 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 GNAI2P04899 355 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 MCM3P25205 808 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 MAP2K2P36507 400 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 DNAJC21Q5F1R6 531 aaKnown RBP5.99□□□□□ -1.45
USP28-213ENST00000544967 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.99□□□□□ -1.45
USP28-213ENST00000544967 PAGR1Q9BTK6 254 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 ANKRD2Q9GZV1 360 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 PHIPQ8WWQ0 1821 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 HIP1O00291 1037 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 ITGA6P23229 1130 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 EVCP57679 992 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 RPS8P62241 208 aaKnown RBP5.99□□□□□ -1.45
USP28-213ENST00000544967 FAM205AQ6ZU69 1335 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 C11orf96Q7Z7L8 435 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 CEP112Q8N8E3 955 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 RUBCNQ92622 972 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 DNAJC25Q9H1X3 360 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 ARHGEF10LQ9HCE6 1279 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 MINPP1Q9UNW1 487 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 EXOC6BQ9Y2D4 811 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 FAN1Q9Y2M0 1017 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 CYP46A1Q9Y6A2 500 aa5.99□□□□□ -1.45
USP28-213ENST00000544967 BECN2A8MW95 431 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 ARHGAP6O43182 974 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 UBTFL1P0CB47 393 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 GYS2P54840 703 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 LONRF2Q1L5Z9 754 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 CCAR1Q8IX12 1150 aaKnown RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 CNTROBQ8N137 903 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 ZNF513Q8N8E2 541 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 LLPHQ9BRT6 129 aaKnown RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 RCOR1Q9UKL0 485 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 MYH2Q9UKX2 1941 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 A0A1W2PQ27 194 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 A0A1W2PQ64 194 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 A0A1W2PQD8 194 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 SRRM3A6NNA2 597 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 ATP2B4P23634 1241 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms