RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 TRIM34Q9BYJ4 488 aa11.63□□□□□ -0.55
SSBP3-215ENST00000533946 UNC93B1Q9H1C4 597 aa11.63□□□□□ -0.55
SSBP3-215ENST00000533946 GJD2Q9UKL4 321 aa11.63□□□□□ -0.55
SSBP3-215ENST00000533946 SLC45A1Q9Y2W3 748 aa11.63□□□□□ -0.55
SSBP3-215ENST00000533946 CEP290O15078 2479 aa11.63□□□□□ -0.55
SSBP3-215ENST00000533946 MPHOSPH10O00566 681 aaKnown RBP11.62□□□□□ -0.55
SSBP3-215ENST00000533946 RNF113AO15541 343 aaKnown RBP11.62□□□□□ -0.55
SSBP3-215ENST00000533946 HERVK_113P62684 666 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 KIF22Q14807 665 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 VPS53Q5VIR6 699 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 TTC6Q86TZ1 520 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 CHMP4CQ96CF2 233 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 PAGR1Q9BTK6 254 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 LNPKQ9C0E8 428 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 CHMP4BQ9H444 224 aaKnown RBP11.62□□□□□ -0.55
SSBP3-215ENST00000533946 BTBD7Q9P203 1132 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 TAOK2Q9UL54 1235 aa11.62□□□□□ -0.55
SSBP3-215ENST00000533946 SZT2Q5T011 3432 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 GPAA1O43292 621 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 PRDM1O75626 825 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 CCL5P13501 91 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 VCAM1P19320 739 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 MX1P20591 662 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 HOXA7P31268 230 aaPredicted RBP11.61□□□□□ -0.55
SSBP3-215ENST00000533946 GRK4P32298 578 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 FCGRTP55899 365 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 CCL14Q16627 93 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 USP17L2Q6R6M4 530 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 SPICE1Q8N0Z3 855 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 RAET1EQ8TD07 263 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 AS3MTQ9HBK9 375 aa11.61□□□□□ -0.55
SSBP3-215ENST00000533946 PARP14Q460N5 1801 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 GREB1LQ9C091 1923 aaPredicted RBP11.6□□□□□ -0.55
SSBP3-215ENST00000533946 MINDY4BA8MYZ0 360 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 TNPO2O14787 897 aaKnown RBP11.6□□□□□ -0.55
SSBP3-215ENST00000533946 ADCY3O60266 1144 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 PDE1AP54750 535 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 HDAC1Q13547 482 aaPredicted RBP11.6□□□□□ -0.55
SSBP3-215ENST00000533946 FAM110CQ1W6H9 321 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 CATSPERGQ6ZRH7 1159 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 C16orf86Q6ZW13 317 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 RASGRP2Q7LDG7 609 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 FAM227BQ96M60 508 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.6□□□□□ -0.551e-6■■■■□ 19.8
SSBP3-215ENST00000533946 RPAP3Q9H6T3 665 aaPredicted RBP11.6□□□□□ -0.55
SSBP3-215ENST00000533946 ATP8A2Q9NTI2 1148 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 FBXO28Q9NVF7 368 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 TMOD4Q9NZQ9 345 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 MORF4L1Q9UBU8 362 aa11.6□□□□□ -0.55
SSBP3-215ENST00000533946 COL11A1P12107 1806 aaPredicted RBP11.6□□□□□ -0.55
SSBP3-215ENST00000533946 IGSF3O75054 1194 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 INHAP05111 366 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 EEF2P13639 858 aaKnown RBP11.59□□□□□ -0.55
SSBP3-215ENST00000533946 CYP2B6P20813 491 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 RASA1P20936 1047 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 IRX3P78415 501 aaPredicted RBP11.59□□□□□ -0.55
SSBP3-215ENST00000533946 ZMYM1Q5SVZ6 1142 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 SAMD1Q6SPF0 538 aaPredicted RBP11.59□□□□□ -0.55
SSBP3-215ENST00000533946 SKAP1Q86WV1 359 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 APPBP2Q92624 585 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 C12orf42Q96LP6 360 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 NUP88Q99567 741 aaPredicted RBP11.59□□□□□ -0.55
SSBP3-215ENST00000533946 FEZ1Q99689 392 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 KIAA1683Q9H0B3 1180 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 FLRT1Q9NZU1 646 aa11.59□□□□□ -0.55
SSBP3-215ENST00000533946 LAMA2P24043 3122 aaKnown RBP11.58□□□□□ -0.56
SSBP3-215ENST00000533946 A0A0D9SFI3 127 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 SPDYE16A6NNV3 312 aaPredicted RBP11.58□□□□□ -0.56
SSBP3-215ENST00000533946 C19orf81C9J6K1 198 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 PDE4AP27815 886 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 ERVK-9P63128 1117 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 ERVK-24P63145 666 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 TRIB2Q92519 343 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 USP6NLQ92738 828 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 FSD1Q9BTV5 496 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 BIN2Q9UBW5 565 aaPredicted RBP11.58□□□□□ -0.56
SSBP3-215ENST00000533946 STAP2Q9UGK3 403 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 TTC41PQ6P2S7 1318 aa11.58□□□□□ -0.56
SSBP3-215ENST00000533946 ALPK3Q96L96 1907 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L15C9J2P7 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L13C9JLJ4 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L11C9JVI0 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L18D6R9N7 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L22D6RA61 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L17D6RBQ6 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L19D6RCP7 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L20D6RJB6 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 GCLCP48506 637 aaPredicted RBP11.57□□□□□ -0.56
SSBP3-215ENST00000533946 ATP2B2Q01814 1243 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 CTDSPL2Q05D32 466 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 USP17L24Q0WX57 530 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 FAM47AQ5JRC9 791 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 ZNF589Q86UQ0 364 aaPredicted RBP11.57□□□□□ -0.56
SSBP3-215ENST00000533946 SMC5Q8IY18 1101 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 IFNL3Q8IZI9 196 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 DIS3LQ8TF46 1054 aaKnown RBP11.57□□□□□ -0.56
SSBP3-215ENST00000533946 ATG4CQ96DT6 458 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 TBC1D2Q9BYX2 928 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 RNF208Q9H0X6 261 aa11.57□□□□□ -0.56
SSBP3-215ENST00000533946 IL25Q9H293 177 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 196.5 ms