RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ORC3Q9UBD5 711 aaPredicted RBP24.51■■□□□ 1.51
VPS28-208ENST00000527797 PPFIA3O75145 1194 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 FDPSP14324 419 aaKnown RBP24.5■■□□□ 1.51
VPS28-208ENST00000527797 TNFAIP1Q13829 316 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 NTRK3Q16288 839 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 TATDN1Q6P1N9 297 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 RBM28Q9NW13 759 aaKnown RBP24.5■■□□□ 1.51
VPS28-208ENST00000527797 HERC5Q9UII4 1024 aaKnown RBP24.5■■□□□ 1.51
VPS28-208ENST00000527797 DICER1Q9UPY3 1922 aaKnown RBP24.5■■□□□ 1.51
VPS28-208ENST00000527797 VPS37CA5D8V6 355 aaPredicted RBP24.5■■□□□ 1.51
VPS28-208ENST00000527797 FAM196BA6NMK8 535 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 CERKLQ49MI3 558 aaPredicted RBP24.5■■□□□ 1.51
VPS28-208ENST00000527797 PNMA1Q8ND90 353 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 CEP95Q96GE4 821 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 TMEM47Q9BQJ4 181 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.5■■□□□ 1.51
VPS28-208ENST00000527797 MTMR6Q9Y217 621 aa24.5■■□□□ 1.51
VPS28-208ENST00000527797 SLURP2P0DP57 97 aa24.49■■□□□ 1.51
VPS28-208ENST00000527797 IFNAR1P17181 557 aa24.49■■□□□ 1.51
VPS28-208ENST00000527797 NOVP48745 357 aa24.49■■□□□ 1.51
VPS28-208ENST00000527797 CLEC17AQ6ZS10 378 aa24.49■■□□□ 1.51
VPS28-208ENST00000527797 CTCFLQ8NI51 663 aaPredicted RBP24.49■■□□□ 1.51
VPS28-208ENST00000527797 TMEM39BQ9GZU3 492 aa24.49■■□□□ 1.51
VPS28-208ENST00000527797 MTMR4Q9NYA4 1195 aa24.49■■□□□ 1.51
VPS28-208ENST00000527797 IGKV6D-41A0A0C4DH26 115 aa24.48■■□□□ 1.51
VPS28-208ENST00000527797 MPHOSPH10O00566 681 aaKnown RBP24.48■■□□□ 1.51
VPS28-208ENST00000527797 GRIN3BO60391 1043 aa24.48■■□□□ 1.51
VPS28-208ENST00000527797 TOP1P11387 765 aaKnown RBP24.48■■□□□ 1.51
VPS28-208ENST00000527797 SSRP1Q08945 709 aaKnown RBP24.48■■□□□ 1.51
VPS28-208ENST00000527797 PPP4R3BQ5MIZ7 849 aa24.48■■□□□ 1.51
VPS28-208ENST00000527797 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.48■■□□□ 1.51
VPS28-208ENST00000527797 SBF1O95248 1867 aa24.48■■□□□ 1.51
VPS28-208ENST00000527797 H3BQV1 296 aa24.47■■□□□ 1.51
VPS28-208ENST00000527797 DDNO94850 711 aaPredicted RBP24.47■■□□□ 1.51
VPS28-208ENST00000527797 IFFO2Q5TF58 517 aa24.47■■□□□ 1.51
VPS28-208ENST00000527797 MAP3K14Q99558 947 aa24.47■■□□□ 1.51
VPS28-208ENST00000527797 F13A1P00488 732 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 KIF5BP33176 963 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 RASA3Q14644 834 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 TRIM22Q8IYM9 498 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 PHKBQ93100 1093 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 HACL1Q9UJ83 578 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 FMNL1O95466 1100 aaPredicted RBP24.46■■□□□ 1.51
VPS28-208ENST00000527797 SLC26A6Q9BXS9 759 aa24.46■■□□□ 1.51
VPS28-208ENST00000527797 STK36Q9NRP7 1315 aa24.45■■□□□ 1.51
VPS28-208ENST00000527797 GOLGB1Q14789 3259 aaKnown RBP24.45■■□□□ 1.5
VPS28-208ENST00000527797 TBC1D12O60347 775 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 BAG4O95429 457 aaKnown RBP24.45■■□□□ 1.5
VPS28-208ENST00000527797 TTLL1O95922 423 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 LMOD1P29536 600 aaPredicted RBP24.45■■□□□ 1.5
VPS28-208ENST00000527797 MCM4P33991 863 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 EPS15P42566 896 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 PGAP2Q9UHJ9 254 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 ATP6V1DQ9Y5K8 247 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 SIPA1L1O43166 1804 aa24.45■■□□□ 1.5
VPS28-208ENST00000527797 ABCB5Q2M3G0 1257 aa24.44■■□□□ 1.5
VPS28-208ENST00000527797 DPY19L2Q6NUT2 758 aa24.44■■□□□ 1.5
VPS28-208ENST00000527797 CDC37L1Q7L3B6 337 aa24.44■■□□□ 1.5
VPS28-208ENST00000527797 NBPF11Q86T75 865 aa24.44■■□□□ 1.5
VPS28-208ENST00000527797 WASF1Q92558 559 aa24.44■■□□□ 1.5
VPS28-208ENST00000527797 NBR1Q14596 966 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 GRM4Q14833 912 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 TMEM179Q6ZVK1 233 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 TMTC3Q6ZXV5 915 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 CCDC82Q8N4S0 544 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 TRPM4Q8TD43 1214 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 C8orf76Q96K31 380 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 KANSL2Q9H9L4 492 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 CABP5Q9NP86 173 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 CLIP2Q9UDT6 1046 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 ASTN2O75129 1339 aaPredicted RBP24.43■■□□□ 1.5
VPS28-208ENST00000527797 GNAQP50148 359 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 FOSBP53539 338 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 CMTR1Q8N1G2 835 aaKnown RBP24.43■■□□□ 1.5
VPS28-208ENST00000527797 RGS22Q8NE09 1264 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 ALG1Q9BT22 464 aa24.43■■□□□ 1.5
VPS28-208ENST00000527797 GDF11O95390 407 aa24.42■■□□□ 1.5
VPS28-208ENST00000527797 PLEKHA8P1O95397 391 aa24.42■■□□□ 1.5
VPS28-208ENST00000527797 AKAP17AQ02040 695 aaKnown RBP24.42■■□□□ 1.5
VPS28-208ENST00000527797 CDAN1Q8IWY9 1227 aa24.42■■□□□ 1.5
VPS28-208ENST00000527797 RNF26Q9BY78 433 aaPredicted RBP24.42■■□□□ 1.5
VPS28-208ENST00000527797 DEXIO95424 95 aa24.41■■□□□ 1.5
VPS28-208ENST00000527797 ANGEL2Q5VTE6 544 aaKnown RBP24.41■■□□□ 1.5
VPS28-208ENST00000527797 APOBEC3FQ8IUX4 373 aaKnown RBP24.41■■□□□ 1.5
VPS28-208ENST00000527797 DEFB129Q9H1M3 183 aa24.41■■□□□ 1.5
VPS28-208ENST00000527797 SCAF8Q9UPN6 1271 aaKnown RBP24.41■■□□□ 1.5
VPS28-208ENST00000527797 MTMR7Q9Y216 660 aa24.41■■□□□ 1.5
VPS28-208ENST00000527797 GOLGA6L22H0YM25 854 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 PRPF3O43395 683 aaKnown RBP24.4■■□□□ 1.5
VPS28-208ENST00000527797 MAP3K10Q02779 954 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 FUT2Q10981 343 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 MIGA2Q7L4E1 593 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 CLEC10AQ8IUN9 316 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 TEPSINQ96N21 525 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 ADARB2Q9NS39 739 aaKnown RBP24.4■■□□□ 1.5
VPS28-208ENST00000527797 NYAP2Q9P242 653 aa24.4■■□□□ 1.5
VPS28-208ENST00000527797 ZC3H4Q9UPT8 1303 aaKnown RBP24.39■■□□□ 1.5
VPS28-208ENST00000527797 DDX11L8A8MPP1 907 aa24.39■■□□□ 1.5
VPS28-208ENST00000527797 SEPT2Q15019 361 aa24.39■■□□□ 1.5
VPS28-208ENST00000527797 FERMT3Q86UX7 667 aa24.39■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 384 ms