RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RAET1EQ8TD07 263 aa24.71■■□□□ 1.55
VPS28-206ENST00000526734 EVI5LQ96CN4 794 aa24.71■■□□□ 1.55
VPS28-206ENST00000526734 ZNF333Q96JL9 665 aa24.71■■□□□ 1.55
VPS28-206ENST00000526734 GSG1L2A8MUP6 293 aa24.7■■□□□ 1.54
VPS28-206ENST00000526734 TNPO2O14787 897 aaKnown RBP24.7■■□□□ 1.54
VPS28-206ENST00000526734 GUCY1A2P33402 732 aa24.7■■□□□ 1.54
VPS28-206ENST00000526734 SEPT2Q15019 361 aa24.7■■□□□ 1.54
VPS28-206ENST00000526734 DYNLL2Q96FJ2 89 aa24.7■■□□□ 1.54
VPS28-206ENST00000526734 SH2D4AQ9H788 454 aa24.7■■□□□ 1.54
VPS28-206ENST00000526734 USP17L15C9J2P7 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L13C9JLJ4 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L11C9JVI0 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L18D6R9N7 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L22D6RA61 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L17D6RBQ6 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L19D6RCP7 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L20D6RJB6 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 CDK8P49336 464 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 HERVK_113P62684 666 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 EVX2Q03828 476 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 USP17L24Q0WX57 530 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 ZMYM1Q5SVZ6 1142 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 SLC44A5Q8NCS7 719 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 COA7Q96BR5 231 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 NACAP1Q9BZK3 213 aa24.69■■□□□ 1.54
VPS28-206ENST00000526734 ROBO3Q96MS0 1386 aa24.68■■□□□ 1.54
VPS28-206ENST00000526734 ZNF287Q9HBT7 754 aa24.68■■□□□ 1.54
VPS28-206ENST00000526734 ZSWIM8A7E2V4 1837 aa24.68■■□□□ 1.54
VPS28-206ENST00000526734 CYP2D7A0A087X1C5 515 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 PRKCZQ05513 592 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 IRF5Q13568 498 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 ACER1Q8TDN7 264 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 P2RX7Q99572 595 aaKnown RBP24.67■■□□□ 1.54
VPS28-206ENST00000526734 TMEM106CQ9BVX2 250 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 LNPKQ9C0E8 428 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 ARHGEF10LQ9HCE6 1279 aa24.67■■□□□ 1.54
VPS28-206ENST00000526734 BAZ2AQ9UIF9 1905 aaKnown RBP24.67■■□□□ 1.54
VPS28-206ENST00000526734 PATL2C9JE40 543 aaKnown RBP24.66■■□□□ 1.54
VPS28-206ENST00000526734 M0R2C6 588 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 VCAM1P19320 739 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 GRK4P32298 578 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 TDO2P48775 406 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 NUCB1Q02818 461 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 ZYXQ15942 572 aaKnown RBP24.66■■□□□ 1.54
VPS28-206ENST00000526734 CHD1LQ86WJ1 897 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 SLAIN1Q8ND83 568 aa24.66■■□□□ 1.54
VPS28-206ENST00000526734 ECM2O94769 699 aaPredicted RBP24.65■■□□□ 1.54
VPS28-206ENST00000526734 APPP05067 770 aa24.65■■□□□ 1.54
VPS28-206ENST00000526734 AKR1B1P15121 316 aa24.65■■□□□ 1.54
VPS28-206ENST00000526734 ICA1Q05084 483 aa24.65■■□□□ 1.54
VPS28-206ENST00000526734 GPRC5AQ8NFJ5 357 aa24.65■■□□□ 1.54
VPS28-206ENST00000526734 LPAR1Q92633 364 aa24.65■■□□□ 1.54
VPS28-206ENST00000526734 IGHDP01880 384 aa24.64■■□□□ 1.54
VPS28-206ENST00000526734 LBX2Q6XYB7 198 aa24.64■■□□□ 1.54
VPS28-206ENST00000526734 CATSPERGQ6ZRH7 1159 aa24.64■■□□□ 1.54
VPS28-206ENST00000526734 KANSL2Q9H9L4 492 aa24.64■■□□□ 1.54
VPS28-206ENST00000526734 EPB41L4AQ9HCS5 686 aaPredicted RBP24.64■■□□□ 1.54
VPS28-206ENST00000526734 RBBP6Q7Z6E9 1792 aaKnown RBP24.64■■□□□ 1.53
VPS28-206ENST00000526734 MGAMO43451 1857 aa24.64■■□□□ 1.53
VPS28-206ENST00000526734 HTTP42858 3142 aa24.64■■□□□ 1.53
VPS28-206ENST00000526734 FLT3LGP49771 235 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 UBXN2AP68543 259 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 IFNL3Q8IZI9 196 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 PXYLP1Q8TE99 480 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 SH3TC2Q8TF17 1288 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 OSBPL3Q9H4L5 887 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 TMX2Q9Y320 296 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 RABGAP1Q9Y3P9 1069 aa24.63■■□□□ 1.53
VPS28-206ENST00000526734 A0A1W2PRG0 241 aa24.62■■□□□ 1.53
VPS28-206ENST00000526734 B4GALNT3Q6L9W6 998 aa24.62■■□□□ 1.53
VPS28-206ENST00000526734 RPAP3Q9H6T3 665 aaPredicted RBP24.62■■□□□ 1.53
VPS28-206ENST00000526734 MKNK2Q9HBH9 465 aa24.62■■□□□ 1.53
VPS28-206ENST00000526734 HELLSQ9NRZ9 838 aa24.62■■□□□ 1.53
VPS28-206ENST00000526734 MYH8P13535 1937 aa24.62■■□□□ 1.53
VPS28-206ENST00000526734 MINDY4BA8MYZ0 360 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 SLC3A2P08195 630 aaKnown RBP24.61■■□□□ 1.53
VPS28-206ENST00000526734 MAPK4P31152 587 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 ERVK-9P63128 1117 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 ERVK-24P63145 666 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 CCNA1P78396 465 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 SEC62Q99442 399 aaKnown RBP24.61■■□□□ 1.53
VPS28-206ENST00000526734 NAPBQ9H115 298 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 RBPJLQ9UBG7 517 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 GABRQQ9UN88 632 aa24.61■■□□□ 1.53
VPS28-206ENST00000526734 ADCY3O60266 1144 aa24.6■■□□□ 1.53
VPS28-206ENST00000526734 SOCS4Q8WXH5 440 aa24.6■■□□□ 1.53
VPS28-206ENST00000526734 VCPKMTQ9H867 229 aa24.6■■□□□ 1.53
VPS28-206ENST00000526734 TXNRD2Q9NNW7 524 aa24.6■■□□□ 1.53
VPS28-206ENST00000526734 POTEFA5A3E0 1075 aa24.59■■□□□ 1.53
VPS28-206ENST00000526734 SMIM22K7EJ46 135 aa24.59■■□□□ 1.53
VPS28-206ENST00000526734 RASA1P20936 1047 aa24.59■■□□□ 1.53
VPS28-206ENST00000526734 CCAR1Q8IX12 1150 aaKnown RBP24.59■■□□□ 1.53
VPS28-206ENST00000526734 HOXC10Q9NYD6 342 aa24.59■■□□□ 1.53
VPS28-206ENST00000526734 BIN2Q9UBW5 565 aaPredicted RBP24.59■■□□□ 1.53
VPS28-206ENST00000526734 WDR46O15213 610 aaKnown RBP24.58■■□□□ 1.53
VPS28-206ENST00000526734 PDE4BQ07343 736 aa24.58■■□□□ 1.53
VPS28-206ENST00000526734 COG2Q14746 738 aa24.58■■□□□ 1.53
VPS28-206ENST00000526734 SIAH1Q8IUQ4 282 aa24.58■■□□□ 1.53
VPS28-206ENST00000526734 PLEKHM2Q8IWE5 1019 aa24.58■■□□□ 1.53
VPS28-206ENST00000526734 NKX2-3Q8TAU0 364 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 307 ms