RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CIZ1Q9ULV3 898 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 LIMCH1Q9UPQ0 1083 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 SMC3Q9UQE7 1217 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 SPDYE2BA6NHP3 402 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 SPDYE6P0CI01 402 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 ANAPC15P60006 121 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 UTP14CQ5TAP6 766 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 C10orf67Q8IYJ2 551 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 LRRC47Q8N1G4 583 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 FAM184AQ8NB25 1140 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 NBPF3Q9H094 633 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 ARPP21Q9UBL0 812 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 HACL1Q9UJ83 578 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 NRXN2Q9P2S2 1712 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 IFIT1BQ5T764 474 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 SERPINB13Q9UIV8 391 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 SLC12A7Q9Y666 1083 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 TACC3Q9Y6A5 838 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 SALL1Q9NSC2 1324 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 COL4A5P29400 1685 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 GADD45BO75293 160 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 GOLGA8HP0CJ92 632 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 CDK8P49336 464 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 ME3Q16798 604 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 RASGRP2Q7LDG7 609 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 FERMT3Q86UX7 667 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 KRT23Q9C075 422 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 CPVLQ9H3G5 476 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 TNKSO95271 1327 aa10.03□□□□□ -0.8
LIMCH1-209ENST00000509277 GRIN3BO60391 1043 aa10.02□□□□□ -0.8
LIMCH1-209ENST00000509277 HHIPL2Q6UWX4 724 aa10.02□□□□□ -0.8
LIMCH1-209ENST00000509277 CCDC112Q8NEF3 446 aa10.02□□□□□ -0.8
LIMCH1-209ENST00000509277 ZDHHC15Q96MV8 337 aa10.02□□□□□ -0.8
LIMCH1-209ENST00000509277 OSBPL5Q9H0X9 879 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-209ENST00000509277 ZSWIM6Q9HCJ5 1215 aa10.02□□□□□ -0.8
LIMCH1-209ENST00000509277 GOLGA8AA7E2F4 631 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 SPICE1Q8N0Z3 855 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 SERPINA10Q9UK55 444 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 PYCARDQ9ULZ3 195 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 MYO3BQ8WXR4 1341 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 RFX7Q2KHR2 1363 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 JAK2O60674 1132 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 MKRN3Q13064 507 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 C12orf60Q5U649 245 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 HOMER1Q86YM7 354 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 AGBL3Q8NEM8 1001 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 CLIP2Q9UDT6 1046 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 FAM198AQ9UFP1 575 aa10.02□□□□□ -0.81
LIMCH1-209ENST00000509277 GOLGA6L4A6NEF3 574 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 CCDC96Q2M329 555 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 PHKBQ93100 1093 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 FEZ1Q99689 392 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 TRIM5Q9C035 493 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 CNNM2Q9H8M5 875 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 HMGB1P09429 215 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 AKR1B1P15121 316 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 ADD1P35611 737 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 FMR1Q06787 632 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 LRMPQ12912 555 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 FILIP1Q7Z7B0 1213 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 SULF1Q8IWU6 871 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 FAM177A1Q8N128 213 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 KAT14Q9H8E8 782 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 CCDC88AQ3V6T2 1871 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 ADM5C9JUS6 153 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 POTEIP0CG38 1075 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 POTEJP0CG39 1038 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 ATP2B1P20020 1258 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 PTGS1P23219 599 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 TNNI2P48788 182 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 METAP2P50579 478 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 ANTXR2P58335 489 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 GNL2Q13823 731 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 TOB2Q14106 344 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 CERKLQ49MI3 558 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 MAP1SQ66K74 1059 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 DCPSQ96C86 337 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 DEFB129Q9H1M3 183 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 RRAGCQ9HB90 399 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 GPRC5DQ9NZD1 345 aa10.01□□□□□ -0.81
LIMCH1-209ENST00000509277 GAKO14976 1311 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 PDS5AQ29RF7 1337 aaKnown RBP10□□□□□ -0.81
LIMCH1-209ENST00000509277 FRMPD2Q68DX3 1309 aaPredicted RBP10□□□□□ -0.81
LIMCH1-209ENST00000509277 FZD9O00144 591 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 ZBTB43O43298 467 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 PPP4CP60510 307 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 NBPF12Q5TAG4 269 aaPredicted RBP10□□□□□ -0.81
LIMCH1-209ENST00000509277 OTUD7BQ6GQQ9 843 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 CKAP2LQ8IYA6 745 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 ANGEL1Q9UNK9 670 aaKnown RBP10□□□□□ -0.81
LIMCH1-209ENST00000509277 SUGT1Q9Y2Z0 365 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 MYH7P12883 1935 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 H3BQV1 296 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 GH2P01242 217 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 IFFO2Q5TF58 517 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 KRT26Q7Z3Y9 468 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 PRIMPOLQ96LW4 560 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 CABP5Q9NP86 173 aa10□□□□□ -0.81
LIMCH1-209ENST00000509277 GPCPD1Q9NPB8 672 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms