RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ATAD5Q96QE3 1844 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 IRF6O14896 467 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 CAPN15O75808 1086 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 SLC10A3P09131 477 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 PPATQ06203 517 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 SPP2Q13103 211 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 COL9A3Q14050 684 aaPredicted RBP14.04□□□□□ -0.16
CUX1-210ENST00000497815 ZYXQ15942 572 aaKnown RBP14.04□□□□□ -0.16
CUX1-210ENST00000497815 SPRYD7Q5W111 196 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 CYB5R4Q7L1T6 521 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 CHST3Q7LGC8 479 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 CCDC102AQ96A19 550 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 CEP95Q96GE4 821 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 CAPNS2Q96L46 248 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 JAKMIP1Q96N16 626 aaKnown RBP14.04□□□□□ -0.16
CUX1-210ENST00000497815 KANSL2Q9H9L4 492 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 UPF2Q9HAU5 1272 aaKnown RBP14.04□□□□□ -0.16
CUX1-210ENST00000497815 AS3MTQ9HBK9 375 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 ZSWIM5Q9P217 1185 aa14.04□□□□□ -0.16
CUX1-210ENST00000497815 IGKV6D-41A0A0C4DH26 115 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 FAM155AB1AL88 458 aaPredicted RBP14.03□□□□□ -0.16
CUX1-210ENST00000497815 EEF2P13639 858 aaKnown RBP14.03□□□□□ -0.16
CUX1-210ENST00000497815 CPA1P15085 419 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 ECE1P42892 770 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 PPIL2Q13356 520 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 KRT32Q14532 448 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 ZNF280CQ8ND82 737 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 ACER1Q8TDN7 264 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 KCNB2Q92953 911 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 NEK1Q96PY6 1258 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 FEZ1Q99689 392 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 IL17RBQ9NRM6 502 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 CLIP2Q9UDT6 1046 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 STX8Q9UNK0 236 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 AFG3L2Q9Y4W6 797 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 PLIN4Q96Q06 1357 aa14.03□□□□□ -0.16
CUX1-210ENST00000497815 PRC1O43663 620 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 RAD21O60216 631 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 AOC2O75106 756 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 ZBTB48P10074 688 aaPredicted RBP14.02□□□□□ -0.17
CUX1-210ENST00000497815 VEGFBP49765 207 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 DGKZQ13574 1117 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 MTMR2Q13614 643 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 TSGA10IPQ3SY00 556 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 IQCA1Q86XH1 822 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 SIAH1Q8IUQ4 282 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 MB21D2Q8IYB1 491 aaPredicted RBP14.02□□□□□ -0.17
CUX1-210ENST00000497815 ZSCAN10Q96SZ4 725 aaPredicted RBP14.02□□□□□ -0.17
CUX1-210ENST00000497815 UBAC1Q9BSL1 405 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 C22orf23Q9BZE7 217 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 ARHGEF10LQ9HCE6 1279 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 MTMR4Q9NYA4 1195 aa14.02□□□□□ -0.17
CUX1-210ENST00000497815 TNKSO95271 1327 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 WDR33Q9C0J8 1336 aaKnown RBP14.01□□□□□ -0.17
CUX1-210ENST00000497815 A0A1W2PRG0 241 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 IFIT3O14879 490 aaKnown RBP14.01□□□□□ -0.17
CUX1-210ENST00000497815 TTLL1O95922 423 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 CASTP20810 708 aaKnown RBP14.01□□□□□ -0.17
CUX1-210ENST00000497815 MCM5P33992 734 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 ANTXR2P58335 489 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 SNAPC2Q13487 334 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 LRRC47Q8N1G4 583 aaKnown RBP14.01□□□□□ -0.17
CUX1-210ENST00000497815 CHMP4CQ96CF2 233 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 TCEANC2Q96MN5 208 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 ZIC5Q96T25 663 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 WDR18Q9BV38 432 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 LRRC2Q9BYS8 371 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 TBC1D2Q9BYX2 928 aa14.01□□□□□ -0.17
CUX1-210ENST00000497815 CCL15-CCL14A0A0B4J2E2 113 aa14□□□□□ -0.17
CUX1-210ENST00000497815 USP17L10C9JJH3 530 aa14□□□□□ -0.17
CUX1-210ENST00000497815 PSMA5P28066 241 aa14□□□□□ -0.17
CUX1-210ENST00000497815 NT5C2P49902 561 aa14□□□□□ -0.17
CUX1-210ENST00000497815 GTF2A2P52657 109 aa14□□□□□ -0.17
CUX1-210ENST00000497815 HMGCS2P54868 508 aa14□□□□□ -0.17
CUX1-210ENST00000497815 BACE1P56817 501 aa14□□□□□ -0.17
CUX1-210ENST00000497815 KIF23Q02241 960 aaPredicted RBP14□□□□□ -0.17
CUX1-210ENST00000497815 CCL15Q16663 113 aa14□□□□□ -0.17
CUX1-210ENST00000497815 BLOC1S2Q6QNY1 142 aa14□□□□□ -0.17
CUX1-210ENST00000497815 GADL1Q6ZQY3 521 aa14□□□□□ -0.17
CUX1-210ENST00000497815 SH2D4AQ9H788 454 aa14□□□□□ -0.17
CUX1-210ENST00000497815 GPHNQ9NQX3 736 aaPredicted RBP14□□□□□ -0.17
CUX1-210ENST00000497815 TCP11L1Q9NUJ3 509 aa14□□□□□ -0.17
CUX1-210ENST00000497815 NYAP2Q9P242 653 aa14□□□□□ -0.17
CUX1-210ENST00000497815 KCNH4Q9UQ05 1017 aa14□□□□□ -0.17
CUX1-210ENST00000497815 MTMR7Q9Y216 660 aa14□□□□□ -0.17
CUX1-210ENST00000497815 GREB1LQ9C091 1923 aaPredicted RBP14□□□□□ -0.17
CUX1-210ENST00000497815 ERICH2A1L162 156 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 CXCL11O14625 94 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 HMGB1P09429 215 aaKnown RBP13.99□□□□□ -0.17
CUX1-210ENST00000497815 ANAPC15P60006 121 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 NOGQ13253 232 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 SART3Q15020 963 aaKnown RBP13.99□□□□□ -0.17
CUX1-210ENST00000497815 TMEM67Q5HYA8 995 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 PPP4R3BQ5MIZ7 849 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 DHX32Q7L7V1 743 aaKnown RBP13.99□□□□□ -0.17
CUX1-210ENST00000497815 SPICE1Q8N0Z3 855 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 ENAHQ8N8S7 591 aaPredicted RBP13.99□□□□□ -0.17
CUX1-210ENST00000497815 TMEM47Q9BQJ4 181 aa13.99□□□□□ -0.17
CUX1-210ENST00000497815 UPF3BQ9BZI7 483 aaKnown RBP13.99□□□□□ -0.17
CUX1-210ENST00000497815 KIAA1683Q9H0B3 1180 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms