RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 MBD3O95983 291 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 HLA-DOAP06340 250 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 NCLP19338 710 aaKnown RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 SHMT1P34896 483 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 SH3BP5LQ7L8J4 393 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 TRIM22Q8IYM9 498 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 PNMA1Q8ND90 353 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 WASF1Q92558 559 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 DHX36Q9H2U1 1008 aaKnown RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 KAT14Q9H8E8 782 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 GJB4Q9NTQ9 266 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 SBF1O95248 1867 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 CNTNAP5Q8WYK1 1306 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 IGKV6D-41A0A0C4DH26 115 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 GADD45BO75293 160 aaPredicted RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 ENTPD3O75355 529 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 PLEKHA8P1O95397 391 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 DEXIO95424 95 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 GUCY1A2P33402 732 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 KIF23Q02241 960 aaPredicted RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 CSPP1Q1MSJ5 1256 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 CMTR1Q8N1G2 835 aaKnown RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 MTMR14Q8NCE2 650 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 TDRD3Q9H7E2 651 aaKnown RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 DNAJC18Q9H819 358 aa10.97□□□□□ -0.65
SF3B1-211ENST00000487698 ZBTB12Q9Y330 459 aaPredicted RBP10.97□□□□□ -0.65
SF3B1-211ENST00000487698 DDTLA6NHG4 134 aaPredicted RBP10.96□□□□□ -0.65
SF3B1-211ENST00000487698 PRELPP51888 382 aa10.96□□□□□ -0.65
SF3B1-211ENST00000487698 GRM4Q14833 912 aa10.96□□□□□ -0.65
SF3B1-211ENST00000487698 KRT40Q6A162 431 aa10.96□□□□□ -0.65
SF3B1-211ENST00000487698 METTL16Q86W50 562 aaKnown RBP10.96□□□□□ -0.65
SF3B1-211ENST00000487698 CTCFLQ8NI51 663 aaPredicted RBP10.96□□□□□ -0.65
SF3B1-211ENST00000487698 JDP2Q8WYK2 163 aa10.96□□□□□ -0.65
SF3B1-211ENST00000487698 TMEM47Q9BQJ4 181 aa10.96□□□□□ -0.65
SF3B1-211ENST00000487698 SCAND2PQ9GZW5 306 aaPredicted RBP10.96□□□□□ -0.65
SF3B1-211ENST00000487698 HDAC9Q9UKV0 1011 aa10.96□□□□□ -0.65
SF3B1-211ENST00000487698 KIF28PB7ZC32 967 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 PRPF3O43395 683 aaKnown RBP10.96□□□□□ -0.66
SF3B1-211ENST00000487698 AKR1B1P15121 316 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 UBE2HP62256 183 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 TCP10Q12799 353 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 ATL3Q6DD88 541 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 CIAPIN1Q6FI81 312 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 BRAPQ7Z569 592 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 CEP95Q96GE4 821 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 ZBED3Q96IU2 234 aaPredicted RBP10.96□□□□□ -0.66
SF3B1-211ENST00000487698 GZF1Q9H116 711 aaPredicted RBP10.96□□□□□ -0.66
SF3B1-211ENST00000487698 SPON1Q9HCB6 807 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 STX8Q9UNK0 236 aa10.96□□□□□ -0.66
SF3B1-211ENST00000487698 KIF5BP33176 963 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 RASSF7Q02833 373 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 PKN1Q16512 942 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 SPDYE2Q495Y8 402 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 CCDC82Q8N4S0 544 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 OGFOD1Q8N543 542 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 SRBD1Q8N5C6 995 aaKnown RBP10.95□□□□□ -0.66
SF3B1-211ENST00000487698 LEO1Q8WVC0 666 aaPredicted RBP10.95□□□□□ -0.66
SF3B1-211ENST00000487698 PI4KBQ9UBF8 816 aa10.95□□□□□ -0.66
SF3B1-211ENST00000487698 TOP1P11387 765 aaKnown RBP10.94□□□□□ -0.66
SF3B1-211ENST00000487698 DLGAP5Q15398 846 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 SHISA4Q96DD7 197 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 MTMR4Q9NYA4 1195 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 TFIP11Q9UBB9 837 aaKnown RBP10.94□□□□□ -0.66
SF3B1-211ENST00000487698 ZNF70Q9UC06 446 aaPredicted RBP10.94□□□□□ -0.66
SF3B1-211ENST00000487698 MAD2L2Q9UI95 211 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 CFAP45Q9UL16 551 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 CNTNAP1P78357 1384 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 MMP1P03956 469 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 U2AF2P26368 475 aaKnown RBP eCLIP10.94□□□□□ -0.665e-9■■■□□ 19.2
SF3B1-211ENST00000487698 MMP14P50281 582 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 TRIM29Q14134 588 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 TNIP1Q15025 636 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 FKBP1CQ5VVH2 108 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 CAVIN1Q6NZI2 390 aaKnown RBP10.94□□□□□ -0.66
SF3B1-211ENST00000487698 TATDN1Q6P1N9 297 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 SPATA32Q96LK8 384 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 CCDC17Q96LX7 622 aa10.94□□□□□ -0.66
SF3B1-211ENST00000487698 PALM3A6NDB9 673 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 FZD9O00144 591 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 SLURP2P0DP57 97 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 RPS12P25398 132 aaKnown RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 MYSM1Q5VVJ2 828 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 FOXP4Q8IVH2 680 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 STAG2Q8N3U4 1231 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 ZNF396Q96N95 335 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 USP28Q96RU2 1077 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 TMOD2Q9NZR1 351 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 TMEM63CQ9P1W3 806 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 V9GY48 417 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 GNAQP50148 359 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 ZNF280AP59817 542 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 AKAP17AQ02040 695 aaKnown RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 SLC35G1Q2M3R5 365 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 ZSCAN29Q8IWY8 852 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 FTOQ9C0B1 505 aaKnown RBP eCLIP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 RBM27Q9P2N5 1060 aaKnown RBP10.93□□□□□ -0.66
SF3B1-211ENST00000487698 RCOR1Q9UKL0 485 aa10.93□□□□□ -0.66
SF3B1-211ENST00000487698 CLRN2A0PK11 232 aa10.92□□□□□ -0.66
SF3B1-211ENST00000487698 FAM196BA6NMK8 535 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms