RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 VSTM4Q8IW00 320 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 TMTC2Q8N394 836 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 TIAM2Q8IVF5 1701 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 NID2Q14112 1375 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 USP17L8P0C7I0 530 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 CD44P16070 742 aaKnown RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 CDC25AP30304 524 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 RPS8P62241 208 aaKnown RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 GRIK5Q16478 980 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 CATIPQ7Z7H3 387 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 CCDC150Q8NCX0 1101 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 ZBTB9Q96C00 473 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 PHF20Q9BVI0 1012 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 DCP1AQ9NPI6 582 aaPredicted RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 EP400Q96L91 3159 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 SARSP49591 514 aaKnown RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 MORC3Q14149 939 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 FBXO33Q7Z6M2 555 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 SYMPKQ92797 1274 aaKnown RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 SMARCE1Q969G3 411 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 DYNLL2Q96FJ2 89 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 CDCA7Q9BWT1 371 aaPredicted RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 RNF26Q9BY78 433 aaPredicted RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 EPC1Q9H2F5 836 aa12.36□□□□□ -0.43
VPS52-217ENST00000478934 CGNQ9P2M7 1197 aaKnown RBP12.36□□□□□ -0.43
VPS52-217ENST00000478934 VWA3AA6NCI4 1184 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 TRIM75PA6NK02 468 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 SLU7O95391 586 aaKnown RBP12.35□□□□□ -0.43
VPS52-217ENST00000478934 TOP1P11387 765 aaKnown RBP12.35□□□□□ -0.43
VPS52-217ENST00000478934 CDK11BP21127 795 aaKnown RBP12.35□□□□□ -0.43
VPS52-217ENST00000478934 THRAP3Q9Y2W1 955 aaKnown RBP12.35□□□□□ -0.43
VPS52-217ENST00000478934 MYH6P13533 1939 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 CACNA1SQ13698 1873 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 KRT2P35908 639 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 RASGRP2Q7LDG7 609 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 NBPF5PQ86XG9 351 aaPredicted RBP12.35□□□□□ -0.43
VPS52-217ENST00000478934 RGS22Q8NE09 1264 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 BLZF1Q9H2G9 400 aa12.35□□□□□ -0.43
VPS52-217ENST00000478934 GNPATO15228 680 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 TEX33O43247 280 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 PRPF3O43395 683 aaKnown RBP12.34□□□□□ -0.43
VPS52-217ENST00000478934 HIBADHP31937 336 aaKnown RBP12.34□□□□□ -0.43
VPS52-217ENST00000478934 IL17AQ16552 155 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 CLEC4GQ6UXB4 293 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 PIK3AP1Q6ZUJ8 805 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 IQCA1Q86XH1 822 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 TMEM139Q8IV31 216 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 RASGRP4Q8TDF6 673 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 BRIP1Q9BX63 1249 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 DDX41Q9UJV9 622 aaKnown RBP12.34□□□□□ -0.43
VPS52-217ENST00000478934 PLCH1Q4KWH8 1693 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 DPYDQ12882 1025 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 PTGDRQ13258 359 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 DIXDC1Q155Q3 683 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 TMTC3Q6ZXV5 915 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 GPKOWQ92917 476 aaPredicted RBP eCLIP12.34□□□□□ -0.43
VPS52-217ENST00000478934 ZNF446Q9NWS9 450 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 OGFRQ9NZT2 677 aa12.34□□□□□ -0.43
VPS52-217ENST00000478934 A0A0U1RQJ8 604 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 ZNF18P17022 549 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 MCM7P33993 719 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 MTF1Q14872 753 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 NT5DC1Q5TFE4 455 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 TOGARAM2Q6ZUX3 1019 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 STAG2Q8N3U4 1231 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 ATRIPQ8WXE1 791 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 PAGE5Q96GU1 130 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 ERO1AQ96HE7 468 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 C8orf37Q96NL8 207 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 SETDB2Q96T68 719 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 DESI2Q9BSY9 194 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 MCM9Q9NXL9 1143 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS52-217ENST00000478934 CNTNAP5Q8WYK1 1306 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 URI1O94763 535 aaPredicted RBP12.33□□□□□ -0.44
VPS52-217ENST00000478934 SYCP1Q15431 976 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 REXO1L1PQ8IX06 675 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 SLC44A5Q8NCS7 719 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 CPLX3Q8WVH0 158 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 SMARCC1Q92922 1105 aaPredicted RBP12.33□□□□□ -0.44
VPS52-217ENST00000478934 TNFRSF25Q93038 417 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 NLRP3Q96P20 1036 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 CPVLQ9H3G5 476 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 KCND1Q9NSA2 647 aa12.33□□□□□ -0.44
VPS52-217ENST00000478934 TM4SF1P30408 202 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 RCSD1Q6JBY9 416 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 TRIM65Q6PJ69 517 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 ZNF579Q8NAF0 562 aaKnown RBP12.32□□□□□ -0.44
VPS52-217ENST00000478934 ZNF397Q8NF99 534 aaPredicted RBP12.32□□□□□ -0.44
VPS52-217ENST00000478934 MYH13Q9UKX3 1938 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 DUOX1Q9NRD9 1551 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 PSDA5PKW4 1024 aaPredicted RBP12.32□□□□□ -0.44
VPS52-217ENST00000478934 USP17L3A6NCW0 530 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 USP17L4A6NCW7 530 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 TSPY2A6NKD2 308 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 CBFA2T2O43439 604 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 FGRP09769 529 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 NFIXQ14938 502 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 TTC38Q5R3I4 469 aa12.32□□□□□ -0.44
VPS52-217ENST00000478934 USP17L1Q7RTZ2 530 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms