RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 NEFLP07196 543 aa16.97■□□□□ 0.31
VAMP4-203ENST00000474047 SLC3A2P08195 630 aaKnown RBP16.97■□□□□ 0.31
VAMP4-203ENST00000474047 IRX3P78415 501 aaPredicted RBP16.97■□□□□ 0.31
VAMP4-203ENST00000474047 MCMDC2Q4G0Z9 681 aa16.97■□□□□ 0.31
VAMP4-203ENST00000474047 C17orf99Q6UX52 265 aa16.97■□□□□ 0.31
VAMP4-203ENST00000474047 DIAPH3Q9NSV4 1193 aa16.97■□□□□ 0.31
VAMP4-203ENST00000474047 SMIM22K7EJ46 135 aa16.96■□□□□ 0.31
VAMP4-203ENST00000474047 FBXO46Q6PJ61 603 aaPredicted RBP16.96■□□□□ 0.31
VAMP4-203ENST00000474047 OTOP1Q7RTM1 612 aa16.96■□□□□ 0.31
VAMP4-203ENST00000474047 FAM227BQ96M60 508 aa16.96■□□□□ 0.31
VAMP4-203ENST00000474047 EPB41L4AQ9HCS5 686 aaPredicted RBP16.96■□□□□ 0.31
VAMP4-203ENST00000474047 HIP1O00291 1037 aa16.96■□□□□ 0.3
VAMP4-203ENST00000474047 AKR1B1P15121 316 aa16.96■□□□□ 0.3
VAMP4-203ENST00000474047 SDSP20132 328 aa16.96■□□□□ 0.3
VAMP4-203ENST00000474047 MFAP1P55081 439 aaKnown RBP16.96■□□□□ 0.3
VAMP4-203ENST00000474047 LACTBP83111 547 aaPredicted RBP16.96■□□□□ 0.3
VAMP4-203ENST00000474047 NMIQ13287 307 aaPredicted RBP16.96■□□□□ 0.3
VAMP4-203ENST00000474047 ZNF444Q8N0Y2 327 aaPredicted RBP16.96■□□□□ 0.3
VAMP4-203ENST00000474047 ARHGEF10LQ9HCE6 1279 aa16.96■□□□□ 0.3
VAMP4-203ENST00000474047 FMNL1O95466 1100 aaPredicted RBP16.95■□□□□ 0.3
VAMP4-203ENST00000474047 PDE4AP27815 886 aa16.95■□□□□ 0.3
VAMP4-203ENST00000474047 GUCY1A2P33402 732 aa16.95■□□□□ 0.3
VAMP4-203ENST00000474047 ATP2B2Q01814 1243 aa16.95■□□□□ 0.3
VAMP4-203ENST00000474047 ACER1Q8TDN7 264 aa16.95■□□□□ 0.3
VAMP4-203ENST00000474047 KIAA1683Q9H0B3 1180 aa16.95■□□□□ 0.3
VAMP4-203ENST00000474047 ASCC2Q9H1I8 757 aaPredicted RBP16.95■□□□□ 0.3
VAMP4-203ENST00000474047 EMILIN3Q9NT22 766 aa16.95■□□□□ 0.3
VAMP4-203ENST00000474047 A0A0D9SFI3 127 aa16.94■□□□□ 0.3
VAMP4-203ENST00000474047 PSMC4P43686 418 aa16.94■□□□□ 0.3
VAMP4-203ENST00000474047 GCLCP48506 637 aaPredicted RBP16.94■□□□□ 0.3
VAMP4-203ENST00000474047 ICA1Q05084 483 aa16.94■□□□□ 0.3
VAMP4-203ENST00000474047 PDE4BQ07343 736 aa16.94■□□□□ 0.3
VAMP4-203ENST00000474047 ANKRD13CQ8N6S4 541 aa16.94■□□□□ 0.3
VAMP4-203ENST00000474047 SH2D4AQ9H788 454 aa16.94■□□□□ 0.3
VAMP4-203ENST00000474047 ADGRA2Q96PE1 1338 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 HOXD10P28358 340 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 PPARAQ07869 468 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 KANSL2Q9H9L4 492 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 LOC285556D6RIA3 1793 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 GNRH1P01148 92 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 BCRP11274 1271 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 HOXA7P31268 230 aaPredicted RBP16.93■□□□□ 0.3
VAMP4-203ENST00000474047 TTC22Q5TAA0 569 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 CWC27Q6UX04 472 aaKnown RBP16.93■□□□□ 0.3
VAMP4-203ENST00000474047 ARHGAP39Q9C0H5 1083 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 HPS5Q9UPZ3 1129 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 PTPN22Q9Y2R2 807 aa16.93■□□□□ 0.3
VAMP4-203ENST00000474047 CCDC171Q6TFL3 1326 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L15C9J2P7 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L13C9JLJ4 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L11C9JVI0 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L18D6R9N7 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L22D6RA61 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L17D6RBQ6 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L19D6RCP7 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L20D6RJB6 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 RAD21O60216 631 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 FCGRTP55899 365 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 USP17L24Q0WX57 530 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 VPS53Q5VIR6 699 aa16.92■□□□□ 0.3
VAMP4-203ENST00000474047 P2RX7Q99572 595 aaKnown RBP16.92■□□□□ 0.3
VAMP4-203ENST00000474047 PRDM1O75626 825 aa16.91■□□□□ 0.3
VAMP4-203ENST00000474047 CENPBP07199 599 aaPredicted RBP16.91■□□□□ 0.3
VAMP4-203ENST00000474047 RASA1P20936 1047 aa16.91■□□□□ 0.3
VAMP4-203ENST00000474047 CENPQQ7L2Z9 268 aaPredicted RBP16.91■□□□□ 0.3
VAMP4-203ENST00000474047 CLEC10AQ8IUN9 316 aa16.91■□□□□ 0.3
VAMP4-203ENST00000474047 C12orf42Q96LP6 360 aa16.91■□□□□ 0.3
VAMP4-203ENST00000474047 ROBO3Q96MS0 1386 aa16.91■□□□□ 0.3
VAMP4-203ENST00000474047 EEF2P13639 858 aaKnown RBP16.9■□□□□ 0.3
VAMP4-203ENST00000474047 VCAM1P19320 739 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 CCDC136Q96JN2 1154 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 RPAP3Q9H6T3 665 aaPredicted RBP16.9■□□□□ 0.3
VAMP4-203ENST00000474047 A0A1W2PRG0 241 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 TSPY3P0CV98 308 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 TSPY8P0CW00 308 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 HSPD1P10809 573 aaKnown RBP16.9■□□□□ 0.3
VAMP4-203ENST00000474047 PRMT2P55345 433 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 HERVK_113P62684 666 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 CTDSPL2Q05D32 466 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 ALX1Q15699 326 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 FAM110CQ1W6H9 321 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 ZNF589Q86UQ0 364 aaPredicted RBP16.9■□□□□ 0.3
VAMP4-203ENST00000474047 CCAR1Q8IX12 1150 aaKnown RBP16.9■□□□□ 0.3
VAMP4-203ENST00000474047 GTF3C2Q8WUA4 911 aaPredicted RBP16.9■□□□□ 0.3
VAMP4-203ENST00000474047 TRIM47Q96LD4 638 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 TANGO6Q9C0B7 1094 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 TOMM22Q9NS69 142 aa16.9■□□□□ 0.3
VAMP4-203ENST00000474047 TNPO2O14787 897 aaKnown RBP16.89■□□□□ 0.29
VAMP4-203ENST00000474047 CAP1Q01518 475 aa16.89■□□□□ 0.29
VAMP4-203ENST00000474047 CATSPERGQ6ZRH7 1159 aa16.89■□□□□ 0.29
VAMP4-203ENST00000474047 PAGR1Q9BTK6 254 aa16.89■□□□□ 0.29
VAMP4-203ENST00000474047 GOPCQ9HD26 462 aa16.89■□□□□ 0.29
VAMP4-203ENST00000474047 TMX2Q9Y320 296 aa16.89■□□□□ 0.29
VAMP4-203ENST00000474047 FGAP02671 866 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 GSPT1P15170 499 aaKnown RBP16.88■□□□□ 0.29
VAMP4-203ENST00000474047 NBPF11Q86T75 865 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 SPICE1Q8N0Z3 855 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 GPRC5AQ8NFJ5 357 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 RAET1EQ8TD07 263 aa16.88■□□□□ 0.29
VAMP4-203ENST00000474047 RUFY2Q8WXA3 655 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms