RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 TROAPQ12815 778 aa20.39■□□□□ 0.85
MCF2L-221ENST00000469415 SF3B3Q15393 1217 aaKnown RBP20.39■□□□□ 0.85
MCF2L-221ENST00000469415 ARHGEF1Q92888 912 aaKnown RBP20.39■□□□□ 0.85
MCF2L-221ENST00000469415 EEF2KMTQ96G04 330 aa20.39■□□□□ 0.85
MCF2L-221ENST00000469415 TFAP4Q01664 338 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 TPTE2Q6XPS3 522 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 PPP1R13BQ96KQ4 1090 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 CRNKL1Q9BZJ0 848 aaKnown RBP20.38■□□□□ 0.85
MCF2L-221ENST00000469415 DNAI1Q9UI46 699 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 ZNF804BA4D1E1 1349 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 PTGDRQ13258 359 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 STAG2Q8N3U4 1231 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 TIGD1Q96MW7 591 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 STK36Q9NRP7 1315 aa20.38■□□□□ 0.85
MCF2L-221ENST00000469415 NEMFO60524 1076 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 MAPKAPK5Q8IW41 473 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 RASSF8Q8NHQ8 419 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 RTCBQ9Y3I0 505 aaKnown RBP20.37■□□□□ 0.85
MCF2L-221ENST00000469415 CLEC4GQ6UXB4 293 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 KIF18AQ8NI77 898 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 TGFBRAP1Q8WUH2 860 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 DESI2Q9BSY9 194 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 MKNK2Q9HBH9 465 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 VAT1LQ9HCJ6 419 aa20.37■□□□□ 0.85
MCF2L-221ENST00000469415 THRAP3Q9Y2W1 955 aaKnown RBP20.37■□□□□ 0.85
MCF2L-221ENST00000469415 RFC4P35249 363 aa20.36■□□□□ 0.85
MCF2L-221ENST00000469415 ELF2Q15723 593 aa20.36■□□□□ 0.85
MCF2L-221ENST00000469415 RNF26Q9BY78 433 aaPredicted RBP20.36■□□□□ 0.85
MCF2L-221ENST00000469415 OSBPL5Q9H0X9 879 aaPredicted RBP20.36■□□□□ 0.85
MCF2L-221ENST00000469415 INTS13Q9NVM9 706 aa20.36■□□□□ 0.85
MCF2L-221ENST00000469415 FBXO33Q7Z6M2 555 aa20.36■□□□□ 0.85
MCF2L-221ENST00000469415 HOOK1Q9UJC3 728 aaKnown RBP20.36■□□□□ 0.85
MCF2L-221ENST00000469415 ROBO1Q9Y6N7 1651 aa20.36■□□□□ 0.85
MCF2L-221ENST00000469415 RTL9Q8NET4 1388 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 BAZ2AQ9UIF9 1905 aaKnown RBP20.35■□□□□ 0.85
MCF2L-221ENST00000469415 NRDCO43847 1150 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 SH3RF3Q8TEJ3 882 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-221ENST00000469415 MED15Q96RN5 788 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 PAXBP1Q9Y5B6 917 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 SRPRBQ9Y5M8 271 aaKnown RBP20.35■□□□□ 0.85
MCF2L-221ENST00000469415 MDM2Q00987 491 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-221ENST00000469415 TTC38Q5R3I4 469 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 BPIFA3Q9BQP9 254 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 CCDC94Q9BW85 323 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-221ENST00000469415 MYH2Q9UKX2 1941 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 IKBKBO14920 756 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 NYAP1Q6ZVC0 841 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 CCDC150Q8NCX0 1101 aa20.35■□□□□ 0.85
MCF2L-221ENST00000469415 TEX33O43247 280 aa20.34■□□□□ 0.85
MCF2L-221ENST00000469415 BRMS1Q9HCU9 246 aa20.34■□□□□ 0.85
MCF2L-221ENST00000469415 F8W031 263 aaPredicted RBP20.34■□□□□ 0.85
MCF2L-221ENST00000469415 FUT2Q10981 343 aa20.34■□□□□ 0.85
MCF2L-221ENST00000469415 TMTC3Q6ZXV5 915 aa20.34■□□□□ 0.85
MCF2L-221ENST00000469415 NARFQ9UHQ1 456 aa20.34■□□□□ 0.85
MCF2L-221ENST00000469415 MYH15Q9Y2K3 1946 aa20.33■□□□□ 0.85
MCF2L-221ENST00000469415 PES1O00541 588 aaKnown RBP20.33■□□□□ 0.85
MCF2L-221ENST00000469415 ACTN4O43707 911 aaKnown RBP20.33■□□□□ 0.85
MCF2L-221ENST00000469415 CD44P16070 742 aaKnown RBP20.33■□□□□ 0.85
MCF2L-221ENST00000469415 CCT6AP40227 531 aaKnown RBP20.33■□□□□ 0.85
MCF2L-221ENST00000469415 FAM196AQ6ZSG2 479 aa20.33■□□□□ 0.85
MCF2L-221ENST00000469415 PHF20Q9BVI0 1012 aa20.33■□□□□ 0.85
MCF2L-221ENST00000469415 KAT14Q9H8E8 782 aa20.33■□□□□ 0.85
MCF2L-221ENST00000469415 CEP131Q9UPN4 1083 aa20.33■□□□□ 0.85
MCF2L-221ENST00000469415 NHSL1Q5SYE7 1610 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 PP2D1A8MPX8 630 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 DHX8Q14562 1220 aaKnown RBP20.33■□□□□ 0.84
MCF2L-221ENST00000469415 KARSQ15046 597 aaKnown RBP20.33■□□□□ 0.84
MCF2L-221ENST00000469415 BRIP1Q9BX63 1249 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 IMPACTQ9P2X3 320 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 C4AP0C0L4 1744 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 C4BP0C0L5 1744 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 SRCAPQ6ZRS2 3230 aa20.33■□□□□ 0.84
MCF2L-221ENST00000469415 UBAP1LF5GYI3 381 aa20.32■□□□□ 0.84
MCF2L-221ENST00000469415 AEBP2Q6ZN18 517 aaPredicted RBP20.32■□□□□ 0.84
MCF2L-221ENST00000469415 UIMC1Q96RL1 719 aa20.32■□□□□ 0.84
MCF2L-221ENST00000469415 CTIFO43310 598 aaKnown RBP20.32■□□□□ 0.84
MCF2L-221ENST00000469415 URI1O94763 535 aaPredicted RBP20.32■□□□□ 0.84
MCF2L-221ENST00000469415 LDHBP07195 334 aaKnown RBP20.32■□□□□ 0.84
MCF2L-221ENST00000469415 MTF1Q14872 753 aa20.32■□□□□ 0.84
MCF2L-221ENST00000469415 ERCC6LQ2NKX8 1250 aa20.32■□□□□ 0.84
MCF2L-221ENST00000469415 HEATR3Q7Z4Q2 680 aa20.32■□□□□ 0.84
MCF2L-221ENST00000469415 PRPF3O43395 683 aaKnown RBP20.32■□□□□ 0.84
MCF2L-221ENST00000469415 PLCD1P51178 756 aa20.32■□□□□ 0.84
MCF2L-221ENST00000469415 MTERF4Q7Z6M4 381 aaKnown RBP20.32■□□□□ 0.84
MCF2L-221ENST00000469415 COL14A1Q05707 1796 aaKnown RBP20.31■□□□□ 0.84
MCF2L-221ENST00000469415 CBFA2T2O43439 604 aa20.31■□□□□ 0.84
MCF2L-221ENST00000469415 VSTM4Q8IW00 320 aa20.31■□□□□ 0.84
MCF2L-221ENST00000469415 PAGE5Q96GU1 130 aa20.31■□□□□ 0.84
MCF2L-221ENST00000469415 EPC1Q9H2F5 836 aa20.31■□□□□ 0.84
MCF2L-221ENST00000469415 RPS6KA4O75676 772 aa20.31■□□□□ 0.84
MCF2L-221ENST00000469415 EIF6P56537 245 aaKnown RBP20.31■□□□□ 0.84
MCF2L-221ENST00000469415 ANAPC4Q9UJX5 808 aa20.31■□□□□ 0.84
MCF2L-221ENST00000469415 TSPY3P0CV98 308 aa20.3■□□□□ 0.84
MCF2L-221ENST00000469415 TSPY8P0CW00 308 aa20.3■□□□□ 0.84
MCF2L-221ENST00000469415 SCG2P13521 617 aa20.3■□□□□ 0.84
MCF2L-221ENST00000469415 PNMA1Q8ND90 353 aa20.3■□□□□ 0.84
MCF2L-221ENST00000469415 CNTNAP5Q8WYK1 1306 aa20.3■□□□□ 0.84
MCF2L-221ENST00000469415 IRX2Q9BZI1 471 aaPredicted RBP20.3■□□□□ 0.84
MCF2L-221ENST00000469415 ZSWIM4Q9H7M6 989 aa20.3■□□□□ 0.84
MCF2L-221ENST00000469415 COL16A1Q07092 1604 aaPredicted RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms