RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MAN1B1Q9UKM7 699 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 NIP7Q9Y221 180 aaKnown RBP eCLIP13.44□□□□□ -0.26
HMGB1-206ENST00000405805 UQCRFS1P1P0C7P4 283 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 CCDC96Q2M329 555 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 CCDC122Q5T0U0 273 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 USPL1Q5W0Q7 1092 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 MLKLQ8NB16 471 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 PIGBQ92521 554 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 ZBTB1Q9Y2K1 713 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 ARHGAP23Q9P227 1491 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 ZPR1O75312 459 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 RBL2Q08999 1139 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 SPA17Q15506 151 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 OXER1Q8TDS5 423 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 TMEM87BQ96K49 555 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 PEAK1Q9H792 1746 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 GOLGA6L7A0A1B0GV03 622 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 HEATR3Q7Z4Q2 680 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 MORC2Q9Y6X9 1032 aaPredicted RBP13.43□□□□□ -0.26
HMGB1-206ENST00000405805 C3P01024 1663 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 HEG1Q9ULI3 1381 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 PDE4BQ07343 736 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 DDB1Q16531 1140 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 AKNAD1Q5T1N1 836 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 VSTM4Q8IW00 320 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 SLC35F6Q8N357 371 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 IRAK4Q9NWZ3 460 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 MYO6Q9UM54 1294 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 ZMYM6O95789 1325 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 EFCAB8A8MWE9 144 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 KRT2P35908 639 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 RFX5P48382 616 aaPredicted RBP13.43□□□□□ -0.26
HMGB1-206ENST00000405805 ST5P78524 1137 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 HLFQ16534 295 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 TSGA10IPQ3SY00 556 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 ZNF654Q8IZM8 581 aa13.43□□□□□ -0.26
HMGB1-206ENST00000405805 CALR3Q96L12 384 aaKnown RBP13.43□□□□□ -0.26
HMGB1-206ENST00000405805 JPH2Q9BR39 696 aaPredicted RBP13.43□□□□□ -0.26
HMGB1-206ENST00000405805 FAM205CA6NFA0 338 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 AKR1B10O60218 316 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 ZEB2O60315 1214 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 FOXO4P98177 505 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SF3A3Q12874 501 aaKnown RBP eCLIP13.42□□□□□ -0.26
HMGB1-206ENST00000405805 LONRF2Q1L5Z9 754 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 CAVIN4Q5BKX8 364 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SPATA5Q8NB90 893 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 MMRN2Q9H8L6 949 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 CNNM2Q9H8M5 875 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 MROH7-TTC4A0A0A0MT08 1334 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SLFN14P0C7P3 912 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 NYAP1Q6ZVC0 841 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 GBP3Q9H0R5 595 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 OSBPL5Q9H0X9 879 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SEC31BQ9NQW1 1179 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SUFUQ9UMX1 484 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 LUC7L2Q9Y383 392 aaKnown RBP13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SLIT1O75093 1534 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 H7C1W4 665 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 DEXIO95424 95 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 TFRCP02786 760 aaKnown RBP13.42□□□□□ -0.26
HMGB1-206ENST00000405805 CACNA2D4Q7Z3S7 1137 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 NBPF11Q86T75 865 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 CEP112Q8N8E3 955 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 RASGRP4Q8TDF6 673 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 MAGEB6P1A0A0J9YX57 407 aa13.42□□□□□ -0.26
HMGB1-206ENST00000405805 KRT18P05783 430 aaKnown RBP13.42□□□□□ -0.26
HMGB1-206ENST00000405805 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.42□□□□□ -0.26
HMGB1-206ENST00000405805 INPP5BP32019 993 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 PTPROQ16827 1216 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 TRMT1LQ7Z2T5 733 aaKnown RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 FANCBQ8NB91 859 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 ATRIPQ8WXE1 791 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 SYMPKQ92797 1274 aaKnown RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 KCNB2Q92953 911 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 CARD10Q9BWT7 1032 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 GYG1P46976 350 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 ANTXR2P58335 489 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 FMR1Q06787 632 aaKnown RBP eCLIP13.41□□□□□ -0.267e-15■■■■□ 21.6
HMGB1-206ENST00000405805 TTC19Q6DKK2 380 aaPredicted RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 ILDR1Q86SU0 546 aaPredicted RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 METTL16Q86W50 562 aaKnown RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 ANKRD13CQ8N6S4 541 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 GPR161Q8N6U8 529 aaKnown RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 IQUBQ8NA54 791 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 SUGCTQ9HAC7 445 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 G3V3G9 751 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 ASIC1P78348 528 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 DCAF8Q5TAQ9 597 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 SOGA3Q5TF21 947 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 NAPGQ99747 312 aaPredicted RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 CXorf56Q9H5V9 222 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 NEDD4P46934 1319 aa13.41□□□□□ -0.26
HMGB1-206ENST00000405805 BAZ2BQ9UIF8 2168 aaKnown RBP13.41□□□□□ -0.26
HMGB1-206ENST00000405805 NCAPH2Q6IBW4 605 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 HDXQ7Z353 690 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 TAX1BP1Q86VP1 789 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 DZIP1Q86YF9 867 aaKnown RBP13.4□□□□□ -0.26
HMGB1-206ENST00000405805 ANKRD18AQ8IVF6 992 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms