RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CNNM2Q9H8M5 875 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 SYNPO2Q9UMS6 1093 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 MANSC4A6NHS7 340 aaPredicted RBP11.96□□□□□ -0.5
VPS53-202ENST00000389040 CYP2D6P10635 497 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 GTF2A2P52657 109 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 KLHL40Q2TBA0 621 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 AKNAD1Q5T1N1 836 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 MFSD6Q6ZSS7 791 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 CAPNS2Q96L46 248 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 KANSL2Q9H9L4 492 aa11.96□□□□□ -0.5
VPS53-202ENST00000389040 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.96□□□□□ -0.5
VPS53-202ENST00000389040 WDR33Q9C0J8 1336 aaKnown RBP11.95□□□□□ -0.5
VPS53-202ENST00000389040 DDX60LQ5H9U9 1706 aaKnown RBP11.95□□□□□ -0.5
VPS53-202ENST00000389040 FAM155AB1AL88 458 aaPredicted RBP11.95□□□□□ -0.5
VPS53-202ENST00000389040 SREBF2Q12772 1141 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 TSGA10IPQ3SY00 556 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 CCDC178Q5BJE1 867 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 RASAL3Q86YV0 1011 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 DNAJC5GQ8N7S2 189 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 OPTNQ96CV9 577 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 DYNLL2Q96FJ2 89 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 WNK4Q96J92 1243 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 ZSCAN31Q96LW9 406 aaPredicted RBP11.95□□□□□ -0.5
VPS53-202ENST00000389040 ELP3Q9H9T3 547 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 SH2B1Q9NRF2 756 aaPredicted RBP11.95□□□□□ -0.5
VPS53-202ENST00000389040 LMBRD1Q9NUN5 540 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 ZBTB21Q9ULJ3 1066 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 KCNH4Q9UQ05 1017 aa11.95□□□□□ -0.5
VPS53-202ENST00000389040 DDX49Q9Y6V7 483 aaKnown RBP11.95□□□□□ -0.5
VPS53-202ENST00000389040 CYP2D7A0A087X1C5 515 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 TESPA1A2RU30 521 aaPredicted RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 C19orf81C9J6K1 198 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 SNAPC2Q13487 334 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 FOXD4L5Q5VV16 416 aaPredicted RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 SAMD1Q6SPF0 538 aaPredicted RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 ZNF280CQ8ND82 737 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 FOXD4L4Q8WXT5 416 aaPredicted RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 CLMNQ96JQ2 1002 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 LARP6Q9BRS8 491 aaKnown RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 KRT23Q9C075 422 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 SH2D4AQ9H788 454 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 ZCCHC17Q9NP64 241 aaKnown RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 ISY1Q9ULR0 285 aaKnown RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 FZD1Q9UP38 647 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS53-202ENST00000389040 AFG3L2Q9Y4W6 797 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 ZHX2Q9Y6X8 837 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 FAM196BA6NMK8 535 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 GH2P01242 217 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 RASA1P20936 1047 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 TRDNQ13061 729 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 KRT32Q14532 448 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 BLOC1S2Q6QNY1 142 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 FASTKD5Q7L8L6 764 aaKnown RBP11.94□□□□□ -0.5
VPS53-202ENST00000389040 NEDD1Q8NHV4 660 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 ESR2Q92731 530 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 TCP11L1Q9NUJ3 509 aa11.94□□□□□ -0.5
VPS53-202ENST00000389040 LARGE1O95461 756 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 CETPP11597 493 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 RPS6KB1P23443 525 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 TM4SF4P48230 202 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 VEGFBP49765 207 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 USP14P54578 494 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 SLC4A8Q2Y0W8 1093 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 OTUD7BQ6GQQ9 843 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 CYP4F22Q6NT55 531 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 PAXIP1Q6ZW49 1069 aaPredicted RBP11.93□□□□□ -0.5
VPS53-202ENST00000389040 MTA3Q9BTC8 594 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 ALDH8A1Q9H2A2 487 aaPredicted RBP11.93□□□□□ -0.5
VPS53-202ENST00000389040 BRPF3Q9ULD4 1205 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 SMC3Q9UQE7 1217 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 TAF6LQ9Y6J9 622 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 PLIN4Q96Q06 1357 aa11.93□□□□□ -0.5
VPS53-202ENST00000389040 IRF6O14896 467 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 PRPF40AO75400 957 aaKnown RBP11.92□□□□□ -0.5
VPS53-202ENST00000389040 ALDH1A1P00352 501 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 CYP21A2P08686 494 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 TSPY3P0CV98 308 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 TSPY8P0CW00 308 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 MAP2K1Q02750 393 aaPredicted RBP11.92□□□□□ -0.5
VPS53-202ENST00000389040 RRP1BQ14684 758 aaKnown RBP11.92□□□□□ -0.5
VPS53-202ENST00000389040 ANKRD1Q15327 319 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 SH3D19Q5HYK7 790 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 SLC44A5Q8NCS7 719 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 OTUD5Q96G74 571 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 NYAP2Q9P242 653 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 NAV1Q8NEY1 1877 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 CDK5RAP2Q96SN8 1893 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 TSPY2A6NKD2 308 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 USP17L10C9JJH3 530 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 MPHOSPH10O00566 681 aaKnown RBP11.92□□□□□ -0.5
VPS53-202ENST00000389040 CA12O43570 354 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 GDF11O95390 407 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 CTDSPL2Q05D32 466 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 ME3Q16798 604 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 CCDC83Q8IWF9 413 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 MKL1Q969V6 931 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 MS4A4AQ96JQ5 239 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 KIAA1683Q9H0B3 1180 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 ARHGEF10LQ9HCE6 1279 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms