RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 TROAPQ12815 778 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 CDAN1Q8IWY9 1227 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 VPS37CA5D8V6 355 aaPredicted RBP31.28■■■□□ 2.6
MSX1-201ENST00000382723 CDKL5O76039 1030 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 TNNI2P48788 182 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 CERKLQ49MI3 558 aaPredicted RBP31.28■■■□□ 2.6
MSX1-201ENST00000382723 METTL16Q86W50 562 aaKnown RBP31.28■■■□□ 2.6
MSX1-201ENST00000382723 PNMA1Q8ND90 353 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 TRPM4Q8TD43 1214 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 TMEM47Q9BQJ4 181 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 HACL1Q9UJ83 578 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 CALM1P0DP23 149 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 CALM2P0DP24 149 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 CALM3P0DP25 149 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 FDPSP14324 419 aaKnown RBP31.28■■■□□ 2.6
MSX1-201ENST00000382723 FOSBP53539 338 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 PHKBQ93100 1093 aa31.28■■■□□ 2.6
MSX1-201ENST00000382723 PLIN4Q96Q06 1357 aa31.27■■■□□ 2.6
MSX1-201ENST00000382723 CCDC196A0A1B0GTZ2 297 aa31.27■■■□□ 2.6
MSX1-201ENST00000382723 RASA3Q14644 834 aa31.27■■■□□ 2.6
MSX1-201ENST00000382723 NTRK3Q16288 839 aa31.27■■■□□ 2.6
MSX1-201ENST00000382723 TATDN1Q6P1N9 297 aa31.27■■■□□ 2.6
MSX1-201ENST00000382723 CCDC17Q96LX7 622 aa31.27■■■□□ 2.6
MSX1-201ENST00000382723 XPO5Q9HAV4 1204 aaKnown RBP eCLIP31.27■■■□□ 2.6
MSX1-201ENST00000382723 ORC3Q9UBD5 711 aaPredicted RBP31.27■■■□□ 2.6
MSX1-201ENST00000382723 NFKBIBQ15653 356 aa31.26■■■□□ 2.6
MSX1-201ENST00000382723 CLEC10AQ8IUN9 316 aa31.26■■■□□ 2.6
MSX1-201ENST00000382723 CMTR1Q8N1G2 835 aaKnown RBP31.26■■■□□ 2.6
MSX1-201ENST00000382723 KIF3AQ9Y496 699 aa31.26■■■□□ 2.6
MSX1-201ENST00000382723 ZSCAN22P10073 491 aaPredicted RBP31.26■■■□□ 2.59
MSX1-201ENST00000382723 TNFAIP1Q13829 316 aa31.26■■■□□ 2.59
MSX1-201ENST00000382723 CCDC82Q8N4S0 544 aa31.26■■■□□ 2.59
MSX1-201ENST00000382723 MTMR4Q9NYA4 1195 aa31.26■■■□□ 2.59
MSX1-201ENST00000382723 TAOK2Q9UL54 1235 aa31.26■■■□□ 2.59
MSX1-201ENST00000382723 MTMR7Q9Y216 660 aa31.26■■■□□ 2.59
MSX1-201ENST00000382723 MTMR6Q9Y217 621 aa31.26■■■□□ 2.59
MSX1-201ENST00000382723 GRIN3BO60391 1043 aa31.25■■■□□ 2.59
MSX1-201ENST00000382723 SHROOM1Q2M3G4 852 aaPredicted RBP31.25■■■□□ 2.59
MSX1-201ENST00000382723 HERC5Q9UII4 1024 aaKnown RBP31.25■■■□□ 2.59
MSX1-201ENST00000382723 IGKV6D-41A0A0C4DH26 115 aa31.24■■■□□ 2.59
MSX1-201ENST00000382723 GDF11O95390 407 aa31.24■■■□□ 2.59
MSX1-201ENST00000382723 CTCFLQ8NI51 663 aaPredicted RBP31.24■■■□□ 2.59
MSX1-201ENST00000382723 LMOD1P29536 600 aaPredicted RBP31.23■■■□□ 2.59
MSX1-201ENST00000382723 NBR1Q14596 966 aa31.23■■■□□ 2.59
MSX1-201ENST00000382723 PPP2R5BQ15173 497 aa31.23■■■□□ 2.59
MSX1-201ENST00000382723 SLC26A6Q9BXS9 759 aa31.23■■■□□ 2.59
MSX1-201ENST00000382723 H3BQV1 296 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 TOP1P11387 765 aaKnown RBP31.22■■■□□ 2.59
MSX1-201ENST00000382723 IFNAR1P17181 557 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 IFFO2Q5TF58 517 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 ANGEL2Q5VTE6 544 aaKnown RBP31.22■■■□□ 2.59
MSX1-201ENST00000382723 CDC37L1Q7L3B6 337 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 MIGA2Q7L4E1 593 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 RBM28Q9NW13 759 aaKnown RBP31.22■■■□□ 2.59
MSX1-201ENST00000382723 PGAP2Q9UHJ9 254 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 SSRP1Q08945 709 aaKnown RBP31.22■■■□□ 2.59
MSX1-201ENST00000382723 CLIP2Q9UDT6 1046 aa31.22■■■□□ 2.59
MSX1-201ENST00000382723 MYH8P13535 1937 aa31.21■■■□□ 2.59
MSX1-201ENST00000382723 PLEKHA8P1O95397 391 aa31.21■■■□□ 2.59
MSX1-201ENST00000382723 NOVP48745 357 aa31.21■■■□□ 2.59
MSX1-201ENST00000382723 ATP2B2Q01814 1243 aa31.21■■■□□ 2.59
MSX1-201ENST00000382723 ABCB5Q2M3G0 1257 aa31.21■■■□□ 2.59
MSX1-201ENST00000382723 HIRAP54198 1017 aaPredicted RBP31.2■■■□□ 2.59
MSX1-201ENST00000382723 RRP1BQ14684 758 aaKnown RBP31.2■■■□□ 2.59
MSX1-201ENST00000382723 FOXD4L6Q3SYB3 417 aaPredicted RBP31.2■■■□□ 2.59
MSX1-201ENST00000382723 DPY19L2Q6NUT2 758 aa31.2■■■□□ 2.59
MSX1-201ENST00000382723 FOXD4L3Q6VB84 417 aaPredicted RBP31.2■■■□□ 2.59
MSX1-201ENST00000382723 GBP4Q96PP9 640 aa31.2■■■□□ 2.59
MSX1-201ENST00000382723 TTLL1O95922 423 aa31.2■■■□□ 2.58
MSX1-201ENST00000382723 PDIA4P13667 645 aaKnown RBP31.2■■■□□ 2.58
MSX1-201ENST00000382723 ANP32EQ9BTT0 268 aa31.2■■■□□ 2.58
MSX1-201ENST00000382723 DEFB129Q9H1M3 183 aa31.2■■■□□ 2.58
MSX1-201ENST00000382723 FMNL1O95466 1100 aaPredicted RBP31.19■■■□□ 2.58
MSX1-201ENST00000382723 F13A1P00488 732 aa31.19■■■□□ 2.58
MSX1-201ENST00000382723 LRRC47Q8N1G4 583 aaKnown RBP31.19■■■□□ 2.58
MSX1-201ENST00000382723 CHAMP1Q96JM3 812 aa31.19■■■□□ 2.58
MSX1-201ENST00000382723 UBE2Q2LH0YL09 131 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 KIF5BP33176 963 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 GUCY1B3Q02153 619 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 NBPF11Q86T75 865 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 TRIM22Q8IYM9 498 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 TEPSINQ96N21 525 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 GGA3Q9NZ52 723 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 BAG4O95429 457 aaKnown RBP31.18■■■□□ 2.58
MSX1-201ENST00000382723 JAG1P78504 1218 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 SEPT2Q15019 361 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 TMTC3Q6ZXV5 915 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 FERMT3Q86UX7 667 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 AIFM3Q96NN9 605 aa31.18■■■□□ 2.58
MSX1-201ENST00000382723 GH2P01242 217 aa31.17■■■□□ 2.58
MSX1-201ENST00000382723 GRM4Q14833 912 aa31.17■■■□□ 2.58
MSX1-201ENST00000382723 TMEM179Q6ZVK1 233 aa31.17■■■□□ 2.58
MSX1-201ENST00000382723 RASGRP2Q7LDG7 609 aa31.17■■■□□ 2.58
MSX1-201ENST00000382723 ALG1Q9BT22 464 aa31.17■■■□□ 2.58
MSX1-201ENST00000382723 ADARB2Q9NS39 739 aaKnown RBP31.17■■■□□ 2.58
MSX1-201ENST00000382723 TBC1D12O60347 775 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 APOBEC3FQ8IUX4 373 aaKnown RBP31.16■■■□□ 2.58
MSX1-201ENST00000382723 C8orf76Q96K31 380 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 MAP3K14Q99558 947 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 CABP5Q9NP86 173 aa31.16■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms