RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 ZBED4O75132 1171 aa4.17□□□□□ -1.74
SYNE1-207ENST00000367255 RILPL1Q5EBL4 403 aa4.17□□□□□ -1.74
SYNE1-207ENST00000367255 CCDC13Q8IYE1 715 aa4.17□□□□□ -1.74
SYNE1-207ENST00000367255 TRPC4APQ8TEL6 797 aa4.17□□□□□ -1.74
SYNE1-207ENST00000367255 TEX13AQ9BXU3 409 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-207ENST00000367255 CASQ2O14958 399 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-207ENST00000367255 FANCD2Q9BXW9 1451 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 TOP1P11387 765 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SESN3P58005 492 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ACTN3Q08043 901 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PPP4R3CPQ6ZMV5 832 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SRGAP1Q7Z6B7 1085 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 STMN2Q93045 179 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 FERMT2Q96AC1 680 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SEPT3Q9UH03 358 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MAP3K12Q12852 859 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 TTC39AQ5SRH9 613 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 RBM20Q5T481 1227 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 EXOC8Q8IYI6 725 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 EFR3BQ9Y2G0 817 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PLCD1P51178 756 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MFN1Q8IWA4 741 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 DDX5P17844 614 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PAX3P23760 479 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MYL6P60660 151 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 KIAA1841Q6NSI8 718 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SPAG5Q96R06 1193 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CFAP221Q4G0U5 840 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 EVI5LQ96CN4 794 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PDLIM2Q96JY6 352 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MAGEE1Q9HCI5 957 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 EID1Q9Y6B2 187 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CREB3O43889 395 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 UBTFL6P0CB48 400 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SPATS1Q496A3 300 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CYP26C1Q6V0L0 522 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 TMEM126BQ8IUX1 230 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 IQUBQ8NA54 791 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PRDM16Q9HAZ2 1276 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ASPHQ12797 758 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SUGP1Q8IWZ8 645 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ANKHQ9HCJ1 492 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CAPN2P17655 700 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ZNF229Q9UJW7 825 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CEP78Q5JTW2 689 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 JADE2Q9NQC1 790 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 KCNA4P22459 653 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SERPINB3P29508 390 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MAP2K1Q02750 393 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SLFN5Q08AF3 891 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CHD1LQ86WJ1 897 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 OSBPL3Q9H4L5 887 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MPP6Q9NZW5 540 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 KIAA0586Q9BVV6 1533 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 TBKBP1A7MCY6 615 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 RGL2O15211 777 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 RAB17Q9H0T7 212 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 AP3M1Q9Y2T2 418 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CCDC80Q76M96 950 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 TRIM63Q969Q1 353 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 USP40Q9NVE5 1235 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 E9PMD0 336 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 NFKBIAP25963 317 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 UBE4AQ14139 1066 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MDH1BQ5I0G3 518 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 TRIM11Q96F44 468 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 DIAPH1O60610 1272 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 FNTAP49354 379 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 RRS1Q15050 365 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 CKAP2LQ8IYA6 745 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ABCA10Q8WWZ4 1543 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PHACTR2O75167 634 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 RPL26P61254 145 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SOGA3Q5TF21 947 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ANO5Q75V66 913 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 KSR1Q8IVT5 923 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 FRMD8P1Q9BZ68 369 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 EIF4E1BA6NMX2 242 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PLCG2P16885 1265 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 FAM161BQ96MY7 647 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 F8W8V4 182 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 PSMA7O14818 248 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ACTN2P35609 894 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ALKBH8Q96BT7 664 aaKnown RBP4.16□□□□□ -1.74
SYNE1-207ENST00000367255 ENOPH1Q9UHY7 261 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 MAD1L1Q9Y6D9 718 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 BLOC1S6Q9UL45 172 aa4.16□□□□□ -1.74
SYNE1-207ENST00000367255 NXNQ6DKJ4 435 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 ZC4H2Q9NQZ6 224 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 TYW1Q9NV66 732 aaKnown RBP4.15□□□□□ -1.74
SYNE1-207ENST00000367255 GRID2IPA4D2P6 1211 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 GSTA1P08263 222 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 RPL13P26373 211 aaKnown RBP4.15□□□□□ -1.74
SYNE1-207ENST00000367255 BASP1P80723 227 aaKnown RBP4.15□□□□□ -1.74
SYNE1-207ENST00000367255 NOX5Q96PH1 765 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 TTI1O43156 1089 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 GIMAP6Q6P9H5 292 aa4.15□□□□□ -1.74
SYNE1-207ENST00000367255 PROCA1Q8NCQ7 364 aaPredicted RBP4.15□□□□□ -1.74
SYNE1-207ENST00000367255 ZNF483Q8TF39 744 aaPredicted RBP4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms