RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 FDPSP14324 419 aaKnown RBP21.77■■□□□ 1.08
CLN3-204ENST00000357857 NBR1Q14596 966 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 FAM83AQ86UY5 434 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 METTL16Q86W50 562 aaKnown RBP21.77■■□□□ 1.08
CLN3-204ENST00000357857 CCDC17Q96LX7 622 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 CSRNP1Q96S65 589 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 STX8Q9UNK0 236 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 SAMD7Q7Z3H4 446 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 CEP95Q96GE4 821 aa21.77■■□□□ 1.08
CLN3-204ENST00000357857 RBM28Q9NW13 759 aaKnown RBP21.77■■□□□ 1.08
CLN3-204ENST00000357857 FAM196BA6NMK8 535 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 H7C1D1 291 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 BAG4O95429 457 aaKnown RBP21.76■■□□□ 1.07
CLN3-204ENST00000357857 F13A1P00488 732 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 EGFRP00533 1210 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 SLURP2P0DP57 97 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 IFNAR1P17181 557 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 MCM4P33991 863 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 TBC1D10BQ4KMP7 808 aaPredicted RBP21.76■■□□□ 1.07
CLN3-204ENST00000357857 PNMA1Q8ND90 353 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.76■■□□□ 1.07
CLN3-204ENST00000357857 MYH4Q9Y623 1939 aa21.76■■□□□ 1.07
CLN3-204ENST00000357857 IGKV6D-41A0A0C4DH26 115 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 H3BQV1 296 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 TNNI2P48788 182 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 KIF4BQ2VIQ3 1234 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 IFFO2Q5TF58 517 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 PHKBQ93100 1093 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 TMEM47Q9BQJ4 181 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 STK36Q9NRP7 1315 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 NOVP48745 357 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 SSRP1Q08945 709 aaKnown RBP21.75■■□□□ 1.07
CLN3-204ENST00000357857 CERKLQ49MI3 558 aaPredicted RBP21.75■■□□□ 1.07
CLN3-204ENST00000357857 TATDN1Q6P1N9 297 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 CDC37L1Q7L3B6 337 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 CTCFLQ8NI51 663 aaPredicted RBP21.75■■□□□ 1.07
CLN3-204ENST00000357857 GPRC5DQ9NZD1 345 aa21.75■■□□□ 1.07
CLN3-204ENST00000357857 HERC5Q9UII4 1024 aaKnown RBP21.75■■□□□ 1.07
CLN3-204ENST00000357857 TCHHQ07283 1943 aa21.74■■□□□ 1.07
CLN3-204ENST00000357857 MPHOSPH10O00566 681 aaKnown RBP21.74■■□□□ 1.07
CLN3-204ENST00000357857 FMNL1O95466 1100 aaPredicted RBP21.74■■□□□ 1.07
CLN3-204ENST00000357857 TOP1P11387 765 aaKnown RBP21.74■■□□□ 1.07
CLN3-204ENST00000357857 C9orf131Q5VYM1 1079 aa21.74■■□□□ 1.07
CLN3-204ENST00000357857 MAP3K14Q99558 947 aa21.74■■□□□ 1.07
CLN3-204ENST00000357857 TMEM39BQ9GZU3 492 aa21.74■■□□□ 1.07
CLN3-204ENST00000357857 MTMR4Q9NYA4 1195 aa21.74■■□□□ 1.07
CLN3-204ENST00000357857 FOSBP53539 338 aa21.73■■□□□ 1.07
CLN3-204ENST00000357857 TNFAIP1Q13829 316 aa21.73■■□□□ 1.07
CLN3-204ENST00000357857 SLC26A6Q9BXS9 759 aa21.73■■□□□ 1.07
CLN3-204ENST00000357857 KIF5BP33176 963 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 GPR162Q16538 588 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 NBPF11Q86T75 865 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 TRIM22Q8IYM9 498 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-204ENST00000357857 ATP6V1DQ9Y5K8 247 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 DDX11L8A8MPP1 907 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 PPP4R3BQ5MIZ7 849 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 TMTC3Q6ZXV5 915 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 CMTR1Q8N1G2 835 aaKnown RBP21.72■■□□□ 1.07
CLN3-204ENST00000357857 C8orf76Q96K31 380 aa21.72■■□□□ 1.07
CLN3-204ENST00000357857 TTLL1O95922 423 aa21.71■■□□□ 1.07
CLN3-204ENST00000357857 GRM4Q14833 912 aa21.71■■□□□ 1.07
CLN3-204ENST00000357857 ALG1Q9BT22 464 aa21.71■■□□□ 1.07
CLN3-204ENST00000357857 HACL1Q9UJ83 578 aa21.71■■□□□ 1.07
CLN3-204ENST00000357857 GOLGA6L22H0YM25 854 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 PLEKHA8P1O95397 391 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 RASA3Q14644 834 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 CCDC82Q8N4S0 544 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 WASF1Q92558 559 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 PGAP2Q9UHJ9 254 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 MYH15Q9Y2K3 1946 aa21.7■■□□□ 1.06
CLN3-204ENST00000357857 DDNO94850 711 aaPredicted RBP21.69■■□□□ 1.06
CLN3-204ENST00000357857 FUT2Q10981 343 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 ABCB5Q2M3G0 1257 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 MCTP1Q6DN14 999 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 FERMT3Q86UX7 667 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 CLEC10AQ8IUN9 316 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 RGS22Q8NE09 1264 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 TRPM4Q8TD43 1214 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 RNF26Q9BY78 433 aaPredicted RBP21.69■■□□□ 1.06
CLN3-204ENST00000357857 ASTN2O75129 1339 aaPredicted RBP21.69■■□□□ 1.06
CLN3-204ENST00000357857 TBC1D12O60347 775 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 DEXIO95424 95 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 GUCY1B3Q02153 619 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 FOXD4L6Q3SYB3 417 aaPredicted RBP21.69■■□□□ 1.06
CLN3-204ENST00000357857 FOXD4L3Q6VB84 417 aaPredicted RBP21.69■■□□□ 1.06
CLN3-204ENST00000357857 TMEM179Q6ZVK1 233 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 CDAN1Q8IWY9 1227 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 CHAMP1Q96JM3 812 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 CLIP2Q9UDT6 1046 aa21.69■■□□□ 1.06
CLN3-204ENST00000357857 GDF11O95390 407 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 EPS15P42566 896 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 GNAQP50148 359 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 AKAP17AQ02040 695 aaKnown RBP21.68■■□□□ 1.06
CLN3-204ENST00000357857 SRBD1Q8N5C6 995 aaKnown RBP21.68■■□□□ 1.06
CLN3-204ENST00000357857 FBXO18Q8NFZ0 1043 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 AIFM3Q96NN9 605 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 KANSL2Q9H9L4 492 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 MAD2L2Q9UI95 211 aa21.68■■□□□ 1.06
CLN3-204ENST00000357857 MTMR7Q9Y216 660 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms