RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CIAPIN1Q6FI81 312 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 OGFOD1Q8N543 542 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 PNMA1Q8ND90 353 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 GPT2Q8TD30 523 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.97■□□□□ 0.47
LIMS1-202ENST00000338045 SIPA1L1O43166 1804 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 DEXIO95424 95 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 MBD3O95983 291 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 NCLP19338 710 aaKnown RBP17.97■□□□□ 0.47
LIMS1-202ENST00000338045 SHMT1P34896 483 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 GSE1Q14687 1217 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 OTUD7BQ6GQQ9 843 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 TMTC3Q6ZXV5 915 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 SH3BP5LQ7L8J4 393 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 CTCFLQ8NI51 663 aaPredicted RBP17.97■□□□□ 0.47
LIMS1-202ENST00000338045 GJB4Q9NTQ9 266 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 PI4KBQ9UBF8 816 aa17.97■□□□□ 0.47
LIMS1-202ENST00000338045 ELP1O95163 1332 aa17.96■□□□□ 0.47
LIMS1-202ENST00000338045 DDTLA6NHG4 134 aaPredicted RBP17.96■□□□□ 0.47
LIMS1-202ENST00000338045 FIBPO43427 364 aa17.96■□□□□ 0.47
LIMS1-202ENST00000338045 TCP10Q12799 353 aa17.96■□□□□ 0.47
LIMS1-202ENST00000338045 ATL3Q6DD88 541 aa17.96■□□□□ 0.47
LIMS1-202ENST00000338045 METTL16Q86W50 562 aaKnown RBP17.96■□□□□ 0.47
LIMS1-202ENST00000338045 CMTR1Q8N1G2 835 aaKnown RBP17.96■□□□□ 0.47
LIMS1-202ENST00000338045 TMEM47Q9BQJ4 181 aa17.96■□□□□ 0.47
LIMS1-202ENST00000338045 IGKV6D-41A0A0C4DH26 115 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 UBE2Q2LH0YL09 131 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 PLEKHA8P1O95397 391 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 GUCY1A2P33402 732 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 MMP14P50281 582 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 DLGAP5Q15398 846 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 KRT40Q6A162 431 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 CEP95Q96GE4 821 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 SCAND2PQ9GZW5 306 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-202ENST00000338045 DNAJC18Q9H819 358 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 PRPF3O43395 683 aaKnown RBP17.95■□□□□ 0.46
LIMS1-202ENST00000338045 KIF5BP33176 963 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 KIF23Q02241 960 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-202ENST00000338045 TNIP1Q15025 636 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 ZBED3Q96IU2 234 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-202ENST00000338045 STX8Q9UNK0 236 aa17.95■□□□□ 0.46
LIMS1-202ENST00000338045 GADD45BO75293 160 aaPredicted RBP17.94■□□□□ 0.46
LIMS1-202ENST00000338045 AKR1B1P15121 316 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 PRELPP51888 382 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 UBE2HP62256 183 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 RASSF7Q02833 373 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 GRM4Q14833 912 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 BRAPQ7Z569 592 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 FOXP4Q8IVH2 680 aaPredicted RBP17.94■□□□□ 0.46
LIMS1-202ENST00000338045 CCDC82Q8N4S0 544 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 SRBD1Q8N5C6 995 aaKnown RBP17.94■□□□□ 0.46
LIMS1-202ENST00000338045 CCDC17Q96LX7 622 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 MTMR4Q9NYA4 1195 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 CNTNAP5Q8WYK1 1306 aa17.94■□□□□ 0.46
LIMS1-202ENST00000338045 MYH8P13535 1937 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 GREB1LQ9C091 1923 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-202ENST00000338045 MYH15Q9Y2K3 1946 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 TOP1P11387 765 aaKnown RBP17.93■□□□□ 0.46
LIMS1-202ENST00000338045 PKN1Q16512 942 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 SPDYE2Q495Y8 402 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 FKBP1CQ5VVH2 108 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 TMOD2Q9NZR1 351 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 ZNF70Q9UC06 446 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-202ENST00000338045 CFAP45Q9UL16 551 aa17.93■□□□□ 0.46
LIMS1-202ENST00000338045 FZD9O00144 591 aa17.92■□□□□ 0.46
LIMS1-202ENST00000338045 RPS12P25398 132 aaKnown RBP17.92■□□□□ 0.46
LIMS1-202ENST00000338045 TRIM29Q14134 588 aa17.92■□□□□ 0.46
LIMS1-202ENST00000338045 LEO1Q8WVC0 666 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-202ENST00000338045 GZF1Q9H116 711 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-202ENST00000338045 TFIP11Q9UBB9 837 aaKnown RBP17.92■□□□□ 0.46
LIMS1-202ENST00000338045 KIF28PB7ZC32 967 aa17.92■□□□□ 0.46
LIMS1-202ENST00000338045 GNAQP50148 359 aa17.92■□□□□ 0.46
LIMS1-202ENST00000338045 AKAP17AQ02040 695 aaKnown RBP17.92■□□□□ 0.46
LIMS1-202ENST00000338045 TATDN1Q6P1N9 297 aa17.92■□□□□ 0.46
LIMS1-202ENST00000338045 ZSCAN29Q8IWY8 852 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-202ENST00000338045 MAD2L2Q9UI95 211 aa17.92■□□□□ 0.46
LIMS1-202ENST00000338045 PALM3A6NDB9 673 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-202ENST00000338045 U2AF2P26368 475 aaKnown RBP eCLIP17.91■□□□□ 0.46
LIMS1-202ENST00000338045 ZNF280AP59817 542 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-202ENST00000338045 SPATA32Q96LK8 384 aa17.91■□□□□ 0.46
LIMS1-202ENST00000338045 ZNF396Q96N95 335 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-202ENST00000338045 V9GY48 417 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-202ENST00000338045 MMP1P03956 469 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 FAM151AQ8WW52 585 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 RBM27Q9P2N5 1060 aaKnown RBP17.9■□□□□ 0.46
LIMS1-202ENST00000338045 RCOR1Q9UKL0 485 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 MYH6P13533 1939 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 CLRN2A0PK11 232 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 SLURP2P0DP57 97 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 MYSM1Q5VVJ2 828 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 CAVIN1Q6NZI2 390 aaKnown RBP17.9■□□□□ 0.46
LIMS1-202ENST00000338045 STAG2Q8N3U4 1231 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 USP28Q96RU2 1077 aa17.9■□□□□ 0.46
LIMS1-202ENST00000338045 CNTNAP1P78357 1384 aa17.89■□□□□ 0.46
LIMS1-202ENST00000338045 WNT10BO00744 389 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 TTLL1O95922 423 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 PPP4R3BQ5MIZ7 849 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 FAM83AQ86UY5 434 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 DPF2Q92785 391 aa17.89■□□□□ 0.45
LIMS1-202ENST00000338045 SHISA4Q96DD7 197 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms