RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 NONOQ15233 471 aaKnown RBP eCLIP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 KRT79Q5XKE5 535 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 CTR9Q6PD62 1173 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 SPICE1Q8N0Z3 855 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 CSRNP1Q96S65 589 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 PKD2L1Q9P0L9 805 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 ABCC12Q96J65 1359 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 SETD1AO15047 1707 aaKnown RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 CDK8P49336 464 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 KIF23Q02241 960 aaPredicted RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 ICA1Q05084 483 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 INF2Q27J81 1249 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 CCDC93Q567U6 631 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 ADALQ6DHV7 355 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 DLG5Q8TDM6 1919 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 CPVLQ9H3G5 476 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 DEF6Q9H4E7 631 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 MAPK8IP1Q9UQF2 711 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 PFKFB1P16118 471 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 MTIF2P46199 727 aaKnown RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 ARHGAP27Q6ZUM4 889 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 REXO1Q8N1G1 1221 aaKnown RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 A0A087WWV3 80 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 FMNL1O95466 1100 aaPredicted RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 CDC27P30260 824 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 ADCY7P51828 1080 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 RESTQ13127 1097 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 EZH2Q15910 746 aaKnown RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 COL23A1Q86Y22 540 aaPredicted RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 BLIDQ8IZY5 108 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 MXD3Q9BW11 206 aa10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 EPB41L4AQ9HCS5 686 aaPredicted RBP10.55□□□□□ -0.72
TMEM39A-201ENST00000319172 N4BP3O15049 544 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 EXOSC10Q01780 885 aaKnown RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 ALX1Q15699 326 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 ENOX2Q16206 610 aaKnown RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 SP8Q8IXZ3 490 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 ENAHQ8N8S7 591 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 LZTS2Q9BRK4 669 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 RNF26Q9BY78 433 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 SLC16A2P36021 539 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 FBXO33Q7Z6M2 555 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 ZNF512BQ96KM6 892 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 LY9Q9HBG7 655 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 CBX8Q9HC52 389 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 NDUFA8P51970 172 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 TRAF1Q13077 416 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 NOM1Q5C9Z4 860 aaKnown RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 CCDC174Q6PII3 467 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 TDRD3Q9H7E2 651 aaKnown RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 CFBP00751 764 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 FGFR2P21802 821 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 KCTD1Q719H9 257 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 KIFC2Q96AC6 838 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 C16orf45Q96MC5 204 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 TSG101Q99816 390 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 ZNF277Q9NRM2 450 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 HOMER2Q9NSB8 354 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 IFNKQ9P0W0 207 aa10.54□□□□□ -0.72
TMEM39A-201ENST00000319172 PLEKHG2Q9H7P9 1386 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 ECE2O60344 883 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 ABCB5Q2M3G0 1257 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 SLC10A5Q5PT55 438 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 SLFN13Q68D06 897 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 CC2D2BQ6DHV5 1058 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 ERMNQ8TAM6 284 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 CRAMP1Q96RY5 1269 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 SENP2Q9HC62 589 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 MROH7-TTC4A0A0A0MT08 1334 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 PNPLA7Q6ZV29 1317 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 CRKP46108 304 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 PNOCQ13519 176 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 KRT25Q7Z3Z0 450 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 PODNQ7Z5L7 613 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 NUP88Q99567 741 aaPredicted RBP10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 SH2D4AQ9H788 454 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 RMND1Q9NWS8 449 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 SERTAD1Q9UHV2 236 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 TOPAZ1Q8N9V7 1692 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 H7C1D1 291 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 SP4Q02446 784 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 MIGA2Q7L4E1 593 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 LRRC4BQ9NT99 713 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 RTEL1Q9NZ71 1219 aa10.53□□□□□ -0.72
TMEM39A-201ENST00000319172 CT47A1Q5JQC4 288 aaPredicted RBP10.52□□□□□ -0.72
TMEM39A-201ENST00000319172 FKBP15Q5T1M5 1219 aa10.52□□□□□ -0.72
TMEM39A-201ENST00000319172 TCERG1LQ5VWI1 586 aa10.52□□□□□ -0.72
TMEM39A-201ENST00000319172 PICK1Q9NRD5 415 aa10.52□□□□□ -0.72
TMEM39A-201ENST00000319172 ZBTB21Q9ULJ3 1066 aa10.52□□□□□ -0.72
TMEM39A-201ENST00000319172 ATP6V0A2Q9Y487 856 aa10.52□□□□□ -0.72
TMEM39A-201ENST00000319172 PTGS1P23219 599 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 ANTXR2P58335 489 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 PTGDRQ13258 359 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 CCDC40Q4G0X9 1142 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 PSMA7O14818 248 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 CHMP2AO43633 222 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 DALRD3Q5D0E6 543 aaKnown RBP10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 LINC00301Q8NCQ3 95 aa10.52□□□□□ -0.73
TMEM39A-201ENST00000319172 BLZF1Q9H2G9 400 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms