RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CFAP221Q4G0U5 840 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 SEL1L2Q5TEA6 688 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 TTLL7Q6ZT98 887 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 GDAP1L1Q96MZ0 367 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 WWC3Q9ULE0 1092 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 RIPOR2Q9Y4F9 1068 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 ABCA9Q8IUA7 1624 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 VWA3BQ502W6 1294 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 USP37Q86T82 979 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 PPANQ9NQ55 473 aaKnown RBP12.81□□□□□ -0.36
VPS39-201ENST00000318006 ATP2A2P16615 1042 aaKnown RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 PKP1Q13835 747 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 CERS3Q8IU89 383 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 MCUR1Q96AQ8 359 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 A0A087WUV0 522 aaPredicted RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 E7EWF7 191 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 PRDM1O75626 825 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 SH3BGRP55822 239 aaPredicted RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 DIS3L2Q8IYB7 885 aaKnown RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 ARHGAP24Q8N264 748 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 RGS22Q8NE09 1264 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 ARHGEF2Q92974 986 aaKnown RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 STAP2Q9UGK3 403 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 A0A0D9SFI3 127 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 VWA3AA6NCI4 1184 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 ZNF174Q15697 407 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 OTUD7BQ6GQQ9 843 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 SPATS2LQ9NUQ6 558 aaKnown RBP12.8□□□□□ -0.36
VPS39-201ENST00000318006 MRVI1Q9Y6F6 885 aa12.8□□□□□ -0.36
VPS39-201ENST00000318006 CTSWP56202 376 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 FAM98CQ17RN3 349 aaKnown RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 CEP128Q6ZU80 1094 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 APBB1IPQ7Z5R6 666 aaPredicted RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 PLCB1Q9NQ66 1216 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 V9GY48 417 aaPredicted RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 TRPM1Q7Z4N2 1603 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 MAGEA1P43355 309 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 PLCB3Q01970 1234 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 PTH1RQ03431 593 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 PAK1Q13153 545 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 KRT71Q3SY84 523 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 LONRF3Q496Y0 759 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 EXOC4Q96A65 974 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 PALD1Q9ULE6 856 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 TMEM94Q12767 1356 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 JAK2O60674 1132 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 CCT5P48643 541 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 RNASE9P60153 205 aaKnown RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 RAPGEF1Q13905 1077 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 PPP2R5BQ15173 497 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 RBBP5Q15291 538 aaKnown RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 SNCBQ16143 134 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 ME3Q16798 604 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 RNF168Q8IYW5 571 aaPredicted RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 KIAA1468Q9P260 1216 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 POLR2DO15514 142 aaKnown RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 HIP1RO75146 1068 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 CDC25BP30305 580 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 PHLDB2Q86SQ0 1253 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 TACO1Q9BSH4 297 aaKnown RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 COPRSQ9NQ92 184 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 SAP30BPQ9UHR5 308 aaKnown RBP12.79□□□□□ -0.36
VPS39-201ENST00000318006 GGA1Q9UJY5 639 aa12.79□□□□□ -0.36
VPS39-201ENST00000318006 CDK12Q9NYV4 1490 aaPredicted RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 ADKP55263 362 aaKnown RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 TERF2Q15554 542 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 RAB3IL1Q8TBN0 382 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 GBP5Q96PP8 586 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 OSBPL3Q9H4L5 887 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 SPHKAPQ2M3C7 1700 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 PROSER3Q2NL68 480 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 MAP7D1Q3KQU3 841 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 TDRD7Q8NHU6 1098 aaKnown RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 TBC1D31Q96DN5 1066 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 DDX41Q9UJV9 622 aaKnown RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 FAM184BQ9ULE4 1060 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 PCCAP05165 728 aaPredicted RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 ZNF131P52739 623 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 CTDSPL2Q05D32 466 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 GKAP1Q5VSY0 366 aaPredicted RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 ZBTB38Q8NAP3 1195 aaPredicted RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 HAUS7Q99871 368 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 FAM204AQ9H8W3 233 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 FAM114A2Q9NRY5 505 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 DTNBO60941 627 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 EEF2P13639 858 aaKnown RBP12.78□□□□□ -0.36
VPS39-201ENST00000318006 PEX19P40855 299 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 POSTNQ15063 836 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 SLC9C1Q4G0N8 1177 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 FCHSD1Q86WN1 690 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 KLHL7Q8IXQ5 586 aa12.78□□□□□ -0.36
VPS39-201ENST00000318006 AATFQ9NY61 560 aaKnown RBP eCLIP12.78□□□□□ -0.36
VPS39-201ENST00000318006 ARHGAP31Q2M1Z3 1444 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 NR1I2O75469 434 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 LUC7L3O95232 432 aaKnown RBP12.77□□□□□ -0.36
VPS39-201ENST00000318006 RASSF2P50749 326 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 CSGALNACT2Q8N6G5 542 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 TAB2Q9NYJ8 693 aa12.77□□□□□ -0.36
VPS39-201ENST00000318006 LONRF2Q1L5Z9 754 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms