RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 RNASE9P60153 205 aaKnown RBP12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 PAK2Q13177 524 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 CYP26C1Q6V0L0 522 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 SYCE1Q8N0S2 351 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 EMILIN1Q9Y6C2 1016 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 STX1BP61266 288 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 MYCNP04198 464 aaPredicted RBP12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 E2F5Q15329 346 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 CDV3Q9UKY7 258 aaKnown RBP12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 SCYL1Q96KG9 808 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 NPR1P16066 1061 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 TLK2Q86UE8 772 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 GDAP1L1Q96MZ0 367 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 MBIPQ9NS73 344 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 BMP15O95972 392 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 KRT71Q3SY84 523 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 ATP6V0A4Q9HBG4 840 aa12.31□□□□□ -0.44
HDGFL3-201ENST00000299633 NOS1P29475 1434 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 TMEM191CA6NGB0 347 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 TMEM191BP0C7N4 346 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 STRIP2Q9ULQ0 834 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 ADGRL1O94910 1474 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 RNF41Q9H4P4 317 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 VPS37BQ9H9H4 285 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 RAPGEF3O95398 923 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 SNX1Q13596 522 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 NBPF20Q3BBV1 942 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 LONRF3Q496Y0 759 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 NFKBIL1Q9UBC1 381 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 ASIC3Q9UHC3 531 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 IFT88Q13099 833 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 JRKLQ9Y4A0 524 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 H3BRJ5 948 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 SERPINB10P48595 397 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 SEPT2Q15019 361 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 TRIM59Q8IWR1 403 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 CACNA1CQ13936 2221 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 WDHD1O75717 1129 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 IFIT1P09914 478 aaKnown RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 LAMC3Q9Y6N6 1575 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 UGGT2Q9NYU1 1516 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 MCF2LO15068 1137 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 ZNF444Q8N0Y2 327 aaPredicted RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 RRP36Q96EU6 259 aaKnown RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 HLA-DPA1P20036 260 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 CASP2P42575 452 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.3□□□□□ -0.443e-6■■■■■ 50.8
HDGFL3-201ENST00000299633 MAP3K2Q9Y2U5 619 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 ZNF213O14771 459 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 CCT6AP40227 531 aaKnown RBP12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 CCDC197Q8NCU1 140 aa12.3□□□□□ -0.44
HDGFL3-201ENST00000299633 FAM83GA6ND36 823 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 FAM133BQ5BKY9 247 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 MICU3Q86XE3 530 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 PPP2R5DQ14738 602 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 MPRIPQ6WCQ1 1025 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 ANKRD42Q8N9B4 389 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 NCBP1Q09161 790 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 IQCDQ96DY2 449 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 RRP15Q9Y3B9 282 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 HAND2P61296 217 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 RCN2Q14257 317 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 TEX9Q8N6V9 391 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 ANKIB1Q9P2G1 1089 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 CAPN11Q9UMQ6 739 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 DAB1O75553 588 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 HDDC2Q7Z4H3 204 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 TRIM56Q9BRZ2 755 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 CARD6Q9BX69 1037 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 CAPS2Q9BXY5 557 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 PTCD1O75127 700 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 IFIT3O14879 490 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 PRDM1O75626 825 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 EPB41P11171 864 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 CCDC85BQ15834 202 aaPredicted RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 C6orf118Q5T5N4 469 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 PRR23D1E9PI22 279 aaPredicted RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 PRR23D2P0DMB1 279 aaPredicted RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 KRT5P13647 590 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 LOC102724159A0A0B4J2E5 919 aa12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 PWP2Q15269 919 aaKnown RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 DCAF17Q5H9S7 520 aaPredicted RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 HP1BP3Q5SSJ5 553 aaPredicted RBP12.29□□□□□ -0.44
HDGFL3-201ENST00000299633 NSD2O96028 1365 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 CHD5Q8TDI0 1954 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 TEKT1Q969V4 418 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 RWDD2BP57060 319 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 PRDM11Q9NQV5 511 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 TSKSQ9UJT2 592 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 CFAP221Q4G0U5 840 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 NUTM2AQ8IVF1 878 aaPredicted RBP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 MIS12Q9H081 205 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 IFIT5Q13325 482 aaKnown RBP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 VWA3BQ502W6 1294 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 MRPS26Q9BYN8 205 aaKnown RBP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 LRRC2Q9BYS8 371 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 PDE6AP16499 860 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 TMTC3Q6ZXV5 915 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 TMED10P49755 219 aaKnown RBP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 SDSP20132 328 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms