RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 DDNO94850 711 aaPredicted RBP26.3■■□□□ 1.8
CDX1-201ENST00000231656 HLA-DOAP06340 250 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 TBC1D10BQ4KMP7 808 aaPredicted RBP26.3■■□□□ 1.8
CDX1-201ENST00000231656 FKBP1CQ5VVH2 108 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 SPATA32Q96LK8 384 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 SERPINB13Q9UIV8 391 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 RXRAP19793 462 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 CDC27P30260 824 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 NT5C2P49902 561 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 SART3Q15020 963 aaKnown RBP26.3■■□□□ 1.8
CDX1-201ENST00000231656 FAM47AQ5JRC9 791 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 MICU3Q86XE3 530 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 ZSCAN29Q8IWY8 852 aaPredicted RBP26.3■■□□□ 1.8
CDX1-201ENST00000231656 UBAC1Q9BSL1 405 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 VEZTQ9HBM0 779 aa26.3■■□□□ 1.8
CDX1-201ENST00000231656 FAM217BQ9NTX9 383 aaPredicted RBP26.3■■□□□ 1.8
CDX1-201ENST00000231656 COL2A1P02458 1487 aaPredicted RBP26.3■■□□□ 1.8
CDX1-201ENST00000231656 RASA1P20936 1047 aa26.29■■□□□ 1.8
CDX1-201ENST00000231656 GUCY1B3Q02153 619 aa26.29■■□□□ 1.8
CDX1-201ENST00000231656 RGS22Q8NE09 1264 aa26.29■■□□□ 1.8
CDX1-201ENST00000231656 RBSNQ9H1K0 784 aa26.29■■□□□ 1.8
CDX1-201ENST00000231656 EHD4Q9H223 541 aa26.29■■□□□ 1.8
CDX1-201ENST00000231656 ATRNL1Q5VV63 1379 aa26.29■■□□□ 1.8
CDX1-201ENST00000231656 CNTNAP1P78357 1384 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 CCDC69A6NI79 296 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 TSPY2A6NKD2 308 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 CDKL5O76039 1030 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 NTRK3Q16288 839 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 KIF4BQ2VIQ3 1234 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 IQCA1Q86XH1 822 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 ZNF444Q8N0Y2 327 aaPredicted RBP26.28■■□□□ 1.8
CDX1-201ENST00000231656 C8orf76Q96K31 380 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 PI4KBQ9UBF8 816 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 SLC12A7Q9Y666 1083 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 ERICH2A1L162 156 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 GOLGA8AA7E2F4 631 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 WTAPQ15007 396 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 FBXO18Q8NFZ0 1043 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 FAM151AQ8WW52 585 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 ZSCAN10Q96SZ4 725 aaPredicted RBP26.28■■□□□ 1.8
CDX1-201ENST00000231656 CFAP45Q9UL16 551 aa26.28■■□□□ 1.8
CDX1-201ENST00000231656 TNKSO95271 1327 aa26.27■■□□□ 1.8
CDX1-201ENST00000231656 TFAP4Q01664 338 aa26.27■■□□□ 1.8
CDX1-201ENST00000231656 TPRNQ4KMQ1 711 aa26.27■■□□□ 1.8
CDX1-201ENST00000231656 MYL10Q9BUA6 226 aa26.27■■□□□ 1.8
CDX1-201ENST00000231656 SWAP70Q9UH65 585 aa26.27■■□□□ 1.8
CDX1-201ENST00000231656 EPS15P42566 896 aa26.26■■□□□ 1.79
CDX1-201ENST00000231656 SEC23AQ15436 765 aa26.26■■□□□ 1.79
CDX1-201ENST00000231656 ATL3Q6DD88 541 aa26.26■■□□□ 1.79
CDX1-201ENST00000231656 CPLX2Q6PUV4 134 aaKnown RBP26.26■■□□□ 1.79
CDX1-201ENST00000231656 FAM83AQ86UY5 434 aa26.26■■□□□ 1.79
CDX1-201ENST00000231656 NASPP49321 788 aaPredicted RBP26.25■■□□□ 1.79
CDX1-201ENST00000231656 CCDC144CPQ8IYA2 1237 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 TMTC2Q8N394 836 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 ENAHQ8N8S7 591 aaPredicted RBP26.25■■□□□ 1.79
CDX1-201ENST00000231656 NMT2O60551 498 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 TSPY3P0CV98 308 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 TSPY8P0CW00 308 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 OTUD7BQ6GQQ9 843 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 CSRNP1Q96S65 589 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 DNAJC18Q9H819 358 aa26.25■■□□□ 1.79
CDX1-201ENST00000231656 LETM1O95202 739 aaPredicted RBP26.24■■□□□ 1.79
CDX1-201ENST00000231656 SLURP2P0DP57 97 aa26.24■■□□□ 1.79
CDX1-201ENST00000231656 RCAN1P53805 252 aa26.24■■□□□ 1.79
CDX1-201ENST00000231656 DPY19L2Q6NUT2 758 aa26.24■■□□□ 1.79
CDX1-201ENST00000231656 SYNE3Q6ZMZ3 975 aa26.24■■□□□ 1.79
CDX1-201ENST00000231656 FOXP4Q8IVH2 680 aaPredicted RBP26.24■■□□□ 1.79
CDX1-201ENST00000231656 CRACR2BQ8N4Y2 399 aaPredicted RBP26.24■■□□□ 1.79
CDX1-201ENST00000231656 TRPM4Q8TD43 1214 aa26.24■■□□□ 1.79
CDX1-201ENST00000231656 PGBD1Q96JS3 809 aa26.24■■□□□ 1.79
CDX1-201ENST00000231656 ASTN2O75129 1339 aaPredicted RBP26.24■■□□□ 1.79
CDX1-201ENST00000231656 ZC3H4Q9UPT8 1303 aaKnown RBP26.24■■□□□ 1.79
CDX1-201ENST00000231656 SHMT1P34896 483 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 METTL16Q86W50 562 aaKnown RBP26.23■■□□□ 1.79
CDX1-201ENST00000231656 ZNF396Q96N95 335 aaPredicted RBP26.23■■□□□ 1.79
CDX1-201ENST00000231656 RCOR1Q9UKL0 485 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 STK36Q9NRP7 1315 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 PHKBQ93100 1093 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 TMEM39BQ9GZU3 492 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 TSPY26PQ9H489 355 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 IL17RBQ9NRM6 502 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 HACL1Q9UJ83 578 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 TAOK2Q9UL54 1235 aa26.23■■□□□ 1.79
CDX1-201ENST00000231656 LIG1P18858 919 aa26.22■■□□□ 1.79
CDX1-201ENST00000231656 LMOD1P29536 600 aaPredicted RBP26.22■■□□□ 1.79
CDX1-201ENST00000231656 USP28Q96RU2 1077 aa26.22■■□□□ 1.79
CDX1-201ENST00000231656 ALG1Q9BT22 464 aa26.22■■□□□ 1.79
CDX1-201ENST00000231656 GJB4Q9NTQ9 266 aa26.22■■□□□ 1.79
CDX1-201ENST00000231656 TCP11L1Q9NUJ3 509 aa26.22■■□□□ 1.79
CDX1-201ENST00000231656 FAM196BA6NMK8 535 aa26.21■■□□□ 1.79
CDX1-201ENST00000231656 TNNI2P48788 182 aa26.21■■□□□ 1.79
CDX1-201ENST00000231656 TNFAIP1Q13829 316 aa26.21■■□□□ 1.79
CDX1-201ENST00000231656 IFIT1BQ5T764 474 aaKnown RBP26.21■■□□□ 1.79
CDX1-201ENST00000231656 NEDD1Q8NHV4 660 aa26.21■■□□□ 1.79
CDX1-201ENST00000231656 SCAF8Q9UPN6 1271 aaKnown RBP26.21■■□□□ 1.79
CDX1-201ENST00000231656 IFNAR1P17181 557 aa26.2■■□□□ 1.79
CDX1-201ENST00000231656 RASA3Q14644 834 aa26.2■■□□□ 1.79
CDX1-201ENST00000231656 RTN1Q16799 776 aa26.2■■□□□ 1.79
CDX1-201ENST00000231656 ZNF654Q8IZM8 581 aa26.2■■□□□ 1.79
CDX1-201ENST00000231656 AIFM3Q96NN9 605 aa26.2■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms