RNA–Protein interactions for RNA: ENSMUST00000113707.8

Tpm1-216, Transcript of Tropomyosin alpha-1 chain, mousemouse

TSL 1 (best) BASIC

Gene Tpm1, Length 1,898 nt, Biotype protein coding, Subcellular localisation Axon .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1-216ENSMUST00000113707 Lce1eQ9D139 143 aa8.32□□□□□ -1.08
Tpm1-216ENSMUST00000113707 Fsip2A2ARZ3 6995 aa8.32□□□□□ -1.08
Tpm1-216ENSMUST00000113707 4933428G20RikQ9D3X4 101 aa8.21□□□□□ -1.09
Tpm1-216ENSMUST00000113707 Krtap19-4Q925H7 84 aa8.19□□□□□ -1.1
Tpm1-216ENSMUST00000113707 Lce1cQ9D1C5 147 aa8.12□□□□□ -1.11
Tpm1-216ENSMUST00000113707 Krtap4-7Q9D732 168 aa8.11□□□□□ -1.11
Tpm1-216ENSMUST00000113707 Krtap6-3A0A087WQL6 57 aa7.98□□□□□ -1.13
Tpm1-216ENSMUST00000113707 Gm9112A2AI92 75 aa7.97□□□□□ -1.13
Tpm1-216ENSMUST00000113707 Sprr2iO70560 76 aa7.94□□□□□ -1.14
Tpm1-216ENSMUST00000113707 Lce3cQ91V05 98 aa7.9□□□□□ -1.14
Tpm1-216ENSMUST00000113707 Lce1kJ3QP15 125 aa7.89□□□□□ -1.15
Tpm1-216ENSMUST00000113707 Lce1lQ9D1G7 135 aa7.88□□□□□ -1.15
Tpm1-216ENSMUST00000113707 A0A1Y7VJH8 109 aa7.85□□□□□ -1.15
Tpm1-216ENSMUST00000113707 Lce3dE9Q8V1 98 aa7.8□□□□□ -1.16
Tpm1-216ENSMUST00000113707 Gm10100J3QK64 120 aa7.79□□□□□ -1.16
Tpm1-216ENSMUST00000113707 Lce3eF8VQJ0 98 aa7.78□□□□□ -1.16
Tpm1-216ENSMUST00000113707 Lce3fQ6PAI4 98 aa7.78□□□□□ -1.16
Tpm1-216ENSMUST00000113707 Lce1fB9EJP6 147 aa7.77□□□□□ -1.17
Tpm1-216ENSMUST00000113707 Lce1a1Q9CQH5 143 aa7.77□□□□□ -1.17
Tpm1-216ENSMUST00000113707 Mt1P02802 61 aaKnown RBP7.72□□□□□ -1.17
Tpm1-216ENSMUST00000113707 Krtap20-2E9Q0A8 60 aa7.68□□□□□ -1.18
Tpm1-216ENSMUST00000113707 Krtap5-2Q9D5Z7 189 aa7.68□□□□□ -1.18
Tpm1-216ENSMUST00000113707 Gm11568A2A4M2 211 aa7.64□□□□□ -1.19
Tpm1-216ENSMUST00000113707 Krtap9-1Q64526 186 aa7.64□□□□□ -1.19
Tpm1-216ENSMUST00000113707 Gm10142J3KMP7 120 aa7.61□□□□□ -1.19
Tpm1-216ENSMUST00000113707 ObscnA2AAJ9 8891 aaKnown RBP7.58□□□□□ -1.2
Tpm1-216ENSMUST00000113707 Lce3aQ497I5 98 aa7.46□□□□□ -1.22
Tpm1-216ENSMUST00000113707 Sprr2hO70559 108 aa7.39□□□□□ -1.23
Tpm1-216ENSMUST00000113707 Gm10153A0A1B0GRL1 320 aa7.21□□□□□ -1.25
Tpm1-216ENSMUST00000113707 Gm4553A0A1B0GSA9 284 aa7.12□□□□□ -1.27
Tpm1-216ENSMUST00000113707 Gm11559Q9D3H7 191 aa7.11□□□□□ -1.27
Tpm1-216ENSMUST00000113707 Gm45337A0A1B0GS71 263 aa7.03□□□□□ -1.28
Tpm1-216ENSMUST00000113707 Sprr2eO70556 76 aa7.01□□□□□ -1.29
Tpm1-216ENSMUST00000113707 Mt3P28184 68 aa6.96□□□□□ -1.3
Tpm1-216ENSMUST00000113707 Krtap28-10A0A1Y7VP58 119 aa6.9□□□□□ -1.31
Tpm1-216ENSMUST00000113707 Gm2431E9Q8S1 172 aa6.87□□□□□ -1.31
Tpm1-216ENSMUST00000113707 Gm40460A0A1B0GR10 244 aa6.83□□□□□ -1.32
Tpm1-216ENSMUST00000113707 Gm7579A0A1B0GRJ4 243 aa6.83□□□□□ -1.32
Tpm1-216ENSMUST00000113707 Krtap5-5Q2TA51 241 aa6.83□□□□□ -1.32
Tpm1-216ENSMUST00000113707 Krtap5-4Q62220 223 aa6.83□□□□□ -1.32
Tpm1-216ENSMUST00000113707 Krtap31-2Q8CAY5 177 aa6.83□□□□□ -1.32
Tpm1-216ENSMUST00000113707 Gm11554B1AQB2 190 aa6.81□□□□□ -1.32
Tpm1-216ENSMUST00000113707 Macf1Q9QXZ0 7354 aaKnown RBP6.78□□□□□ -1.32
Tpm1-216ENSMUST00000113707 A0A1Y7VLE6 161 aa6.77□□□□□ -1.33
Tpm1-216ENSMUST00000113707 Krtap28-13A0A087WQP5 138 aa6.66□□□□□ -1.34
Tpm1-216ENSMUST00000113707 Hmcn1D3YXG0 5634 aa6.64□□□□□ -1.35
Tpm1-216ENSMUST00000113707 Krtap31-1Q9D644 177 aa6.59□□□□□ -1.35
Tpm1-216ENSMUST00000113707 Kmt2dQ6PDK2 5588 aa6.58□□□□□ -1.36
Tpm1-216ENSMUST00000113707 A030005L19RikA0A1Y7VIU2 113 aa6.54□□□□□ -1.36
Tpm1-216ENSMUST00000113707 Sprr2fO70557 76 aa6.52□□□□□ -1.37
Tpm1-216ENSMUST00000113707 A030005K14RikA0A1Y7VNY1 122 aa6.47□□□□□ -1.37
Tpm1-216ENSMUST00000113707 Gm10024A0A0A0MQA4 119 aa6.42□□□□□ -1.38
Tpm1-216ENSMUST00000113707 Gm39115A0A1B0GSH7 232 aa6.39□□□□□ -1.39
Tpm1-216ENSMUST00000113707 Eppk1Q8R0W0 6548 aa6.32□□□□□ -1.4
Tpm1-216ENSMUST00000113707 Krtap4-16Q91W93 202 aa6.02□□□□□ -1.45
Tpm1-216ENSMUST00000113707 Gm7544A0A1Y7VJ58 118 aa6□□□□□ -1.45
Tpm1-216ENSMUST00000113707 DstQ91ZU6 7393 aaKnown RBP5.94□□□□□ -1.46
Tpm1-216ENSMUST00000113707 Gm11639A0A1D5RLM8 5808 aa5.92□□□□□ -1.46
Tpm1-216ENSMUST00000113707 A0A1Y7VJ07 166 aa5.88□□□□□ -1.47
Tpm1-216ENSMUST00000113707 1110025L11RikO09048 78 aa5.82□□□□□ -1.48
Tpm1-216ENSMUST00000113707 Krtap6-5Q925H3 78 aa5.82□□□□□ -1.48
Tpm1-216ENSMUST00000113707 Muc19Q6PZE0 7524 aa5.81□□□□□ -1.48
Tpm1-216ENSMUST00000113707 Gpr98Q8VHN7 6298 aaKnown RBP5.64□□□□□ -1.51
Tpm1-216ENSMUST00000113707 AhnakE9Q616 5656 aaKnown RBP5.64□□□□□ -1.51
Tpm1-216ENSMUST00000113707 A030014E15RikA0A1Y7VJV2 120 aa5.63□□□□□ -1.51
Tpm1-216ENSMUST00000113707 Gm45618A0A1B0GSA0 219 aa5.61□□□□□ -1.51
Tpm1-216ENSMUST00000113707 Muc16A0A140LJ72 8478 aa5.56□□□□□ -1.52
Tpm1-216ENSMUST00000113707 A030003K21RikA0A1Y7VIM3 128 aa5.43□□□□□ -1.54
Tpm1-216ENSMUST00000113707 NebE9Q1W3 7152 aa5.3□□□□□ -1.56
Tpm1-216ENSMUST00000113707 Gm10229O08631 77 aa5.17□□□□□ -1.58
Tpm1-216ENSMUST00000113707 Sprr2bO70554 98 aa5.16□□□□□ -1.58
Tpm1-216ENSMUST00000113707 Gm6217A0A1Y7VJK9 128 aa5.15□□□□□ -1.59
Tpm1-216ENSMUST00000113707 Gm29735A0A1B0GT06 219 aa5.13□□□□□ -1.59
Tpm1-216ENSMUST00000113707 Gm11567Q9D141 195 aa5.04□□□□□ -1.6
Tpm1-216ENSMUST00000113707 A0A286YCP9 139 aa4.87□□□□□ -1.63
Tpm1-216ENSMUST00000113707 Krtap21-1Q925H4 128 aa4.76□□□□□ -1.65
Tpm1-216ENSMUST00000113707 Krtap6-2O08884 159 aa4.41□□□□□ -1.7
Tpm1-216ENSMUST00000113707 Phgr1Q8K0G7 91 aa4.37□□□□□ -1.71
Tpm1-216ENSMUST00000113707 Krtap5-1Q64507 230 aa3.27□□□□□ -1.89
Tpm1-216ENSMUST00000113707 Gm4559A4IF42 199 aa2.95□□□□□ -1.94
Retrieved 80 of 22,080 RNA–protein pairs in 11.8 ms