RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 RAI14Q9P0K7 980 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 TNKSO95271 1327 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 A0A087X0B3 334 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 ERICH2A1L162 156 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 SLU7O95391 586 aaKnown RBP17.07■□□□□ 0.32
CLN3-253ENST00000636977 SART3Q15020 963 aaKnown RBP17.07■□□□□ 0.32
CLN3-253ENST00000636977 ERCC6LQ2NKX8 1250 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 HOMER1Q86YM7 354 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 TAF1P21675 1872 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 WASF1Q92558 559 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 ERO1AQ96HE7 468 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 UBAC1Q9BSL1 405 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 TIAM2Q8IVF5 1701 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 DEXIO95424 95 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 TOP1P11387 765 aaKnown RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 KCNQ4P56696 695 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 SEC23AQ15436 765 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 FOXP1Q9H334 677 aaPredicted RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 TMX1Q9H3N1 280 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 SAMSN1Q9NSI8 373 aaKnown RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 DNAI1Q9UI46 699 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 NFE2L3Q9Y4A8 694 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 PLEKHA8P1O95397 391 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 TMEM139Q8IV31 216 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 FAM177A1Q8N128 213 aaPredicted RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 ZNF384Q8TF68 577 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 EPSTI1Q96J88 318 aa17.06■□□□□ 0.32
CLN3-253ENST00000636977 ZFP91Q96JP5 570 aaPredicted RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 DDX41Q9UJV9 622 aaKnown RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 COL1A1P02452 1464 aaPredicted RBP17.06■□□□□ 0.32
CLN3-253ENST00000636977 BCORQ6W2J9 1755 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 GNAT2P19087 354 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 PKN1Q16512 942 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 RILPL1Q5EBL4 403 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 TRIM65Q6PJ69 517 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 ENAHQ8N8S7 591 aaPredicted RBP17.05■□□□□ 0.32
CLN3-253ENST00000636977 L2HGDHQ9H9P8 463 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 LOC102724428A0A0B4J2F2 783 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 ACTN4O43707 911 aaKnown RBP17.05■□□□□ 0.32
CLN3-253ENST00000636977 ADKP55263 362 aaKnown RBP17.05■□□□□ 0.32
CLN3-253ENST00000636977 SIK1P57059 783 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 NID2Q14112 1375 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 CCDC93Q567U6 631 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 MYH14Q7Z406 1995 aaKnown RBP17.05■□□□□ 0.32
CLN3-253ENST00000636977 DOT1LQ8TEK3 1739 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 AK7Q96M32 723 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 FEZ1Q99689 392 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 OGFRQ9NZT2 677 aa17.05■□□□□ 0.32
CLN3-253ENST00000636977 BAZ2BQ9UIF8 2168 aaKnown RBP17.05■□□□□ 0.32
CLN3-253ENST00000636977 MAGEB6P1A0A0J9YX57 407 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 SARSP49591 514 aaKnown RBP17.04■□□□□ 0.32
CLN3-253ENST00000636977 REXO1L1PQ8IX06 675 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 SRPRBQ9Y5M8 271 aaKnown RBP17.04■□□□□ 0.32
CLN3-253ENST00000636977 V9GY48 417 aaPredicted RBP17.04■□□□□ 0.32
CLN3-253ENST00000636977 BCL9LQ86UU0 1499 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 CBFA2T2O43439 604 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 KLRK1P26718 216 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 AFMP43652 599 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 MORC3Q14149 939 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 ZNF397Q8NF99 534 aaPredicted RBP17.04■□□□□ 0.32
CLN3-253ENST00000636977 SMARCE1Q969G3 411 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 ZBTB9Q96C00 473 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 DHX58Q96C10 678 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 RIOK1Q9BRS2 568 aaKnown RBP17.04■□□□□ 0.32
CLN3-253ENST00000636977 ZNF446Q9NWS9 450 aa17.04■□□□□ 0.32
CLN3-253ENST00000636977 MYH2Q9UKX2 1941 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 ADAMTS3O15072 1205 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 NMT2O60551 498 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 COBLO75128 1261 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 ETF1P62495 437 aaKnown RBP17.03■□□□□ 0.32
CLN3-253ENST00000636977 ERFEQ4G0M1 354 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 BAZ2AQ9UIF9 1905 aaKnown RBP17.03■□□□□ 0.32
CLN3-253ENST00000636977 CICQ96RK0 1608 aaPredicted RBP17.03■□□□□ 0.32
CLN3-253ENST00000636977 KIF2AO00139 706 aaPredicted RBP17.03■□□□□ 0.32
CLN3-253ENST00000636977 ADAMTS2O95450 1211 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 ZNF18P17022 549 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 KCNJ6P48051 423 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 FUT2Q10981 343 aa17.03■□□□□ 0.32
CLN3-253ENST00000636977 KCNQ2O43526 872 aa17.02■□□□□ 0.32
CLN3-253ENST00000636977 IRX5P78411 483 aaPredicted RBP17.02■□□□□ 0.32
CLN3-253ENST00000636977 SMYD4Q8IYR2 804 aaPredicted RBP17.02■□□□□ 0.32
CLN3-253ENST00000636977 MARCH10Q8NA82 808 aaPredicted RBP17.02■□□□□ 0.32
CLN3-253ENST00000636977 STAMQ92783 540 aa17.02■□□□□ 0.32
CLN3-253ENST00000636977 TRERF1Q96PN7 1200 aa17.02■□□□□ 0.32
CLN3-253ENST00000636977 RNF41Q9H4P4 317 aaPredicted RBP17.02■□□□□ 0.32
CLN3-253ENST00000636977 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-253ENST00000636977 VEGFAP15692 232 aaPredicted RBP17.02■□□□□ 0.31
CLN3-253ENST00000636977 STX17P56962 302 aa17.02■□□□□ 0.31
CLN3-253ENST00000636977 SLC4A8Q2Y0W8 1093 aa17.02■□□□□ 0.31
CLN3-253ENST00000636977 NT5DC1Q5TFE4 455 aa17.02■□□□□ 0.31
CLN3-253ENST00000636977 BICDL1Q6ZP65 573 aa17.02■□□□□ 0.31
CLN3-253ENST00000636977 TOGARAM2Q6ZUX3 1019 aa17.02■□□□□ 0.31
CLN3-253ENST00000636977 ESR2Q92731 530 aa17.02■□□□□ 0.31
CLN3-253ENST00000636977 ZSCAN10Q96SZ4 725 aaPredicted RBP17.02■□□□□ 0.31
CLN3-253ENST00000636977 CCDC196A0A1B0GTZ2 297 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 CD44P16070 742 aaKnown RBP17.01■□□□□ 0.31
CLN3-253ENST00000636977 TBX2Q13207 712 aaPredicted RBP17.01■□□□□ 0.31
CLN3-253ENST00000636977 KLHL10Q6JEL2 608 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 VWA3AA6NCI4 1184 aa17.01■□□□□ 0.31
CLN3-253ENST00000636977 ZNF174Q15697 407 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms