RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ZNF333Q96JL9 665 aa18.23■□□□□ 0.51
LIG1-215ENST00000597901 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■■□□□ 13.3
LIG1-215ENST00000597901 ARMT1Q9H993 441 aa18.23■□□□□ 0.51
LIG1-215ENST00000597901 PNMA3Q9UL41 463 aa18.23■□□□□ 0.51
LIG1-215ENST00000597901 USP17L10C9JJH3 530 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 GH2P01242 217 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 FCGRTP55899 365 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 MTMR2Q13614 643 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 UBE3CQ15386 1083 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 CERKLQ49MI3 558 aaPredicted RBP18.22■□□□□ 0.51
LIG1-215ENST00000597901 SH3TC2Q8TF17 1288 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 SDR42E1Q8WUS8 393 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 TMEM106CQ9BVX2 250 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 MCM9Q9NXL9 1143 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 TMOD4Q9NZQ9 345 aa18.22■□□□□ 0.51
LIG1-215ENST00000597901 PRKAB2O43741 272 aa18.21■□□□□ 0.51
LIG1-215ENST00000597901 CHGBP05060 677 aa18.21■□□□□ 0.51
LIG1-215ENST00000597901 ANKRD13CQ8N6S4 541 aa18.21■□□□□ 0.51
LIG1-215ENST00000597901 ASCC2Q9H1I8 757 aaPredicted RBP18.21■□□□□ 0.51
LIG1-215ENST00000597901 DCP1AQ9NPI6 582 aaPredicted RBP18.21■□□□□ 0.51
LIG1-215ENST00000597901 MYO5AQ9Y4I1 1855 aaKnown RBP18.2■□□□□ 0.5
LIG1-215ENST00000597901 HOXA7P31268 230 aaPredicted RBP18.2■□□□□ 0.5
LIG1-215ENST00000597901 SHMT1P34896 483 aa18.2■□□□□ 0.5
LIG1-215ENST00000597901 GCLCP48506 637 aaPredicted RBP18.2■□□□□ 0.5
LIG1-215ENST00000597901 GABPAQ06546 454 aa18.2■□□□□ 0.5
LIG1-215ENST00000597901 PRPF38BQ5VTL8 546 aaKnown RBP18.2■□□□□ 0.5
LIG1-215ENST00000597901 ZSCAN25Q6NSZ9 544 aa18.2■□□□□ 0.5
LIG1-215ENST00000597901 RAET1EQ8TD07 263 aa18.2■□□□□ 0.5
LIG1-215ENST00000597901 P2RX7Q99572 595 aaKnown RBP18.2■□□□□ 0.5
LIG1-215ENST00000597901 EMILIN3Q9NT22 766 aa18.2■□□□□ 0.5
LIG1-215ENST00000597901 MYPNQ86TC9 1320 aa18.2■□□□□ 0.5
LIG1-215ENST00000597901 MAST2Q6P0Q8 1798 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 MBD4O95243 580 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 MYCP01106 439 aaPredicted RBP18.19■□□□□ 0.5
LIG1-215ENST00000597901 EN2P19622 333 aaPredicted RBP18.19■□□□□ 0.5
LIG1-215ENST00000597901 EVX2Q03828 476 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 ABCB5Q2M3G0 1257 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 CRBNQ96SW2 442 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 CABP5Q9NP86 173 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 ATP8A2Q9NTI2 1148 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 GABRQQ9UN88 632 aa18.19■□□□□ 0.5
LIG1-215ENST00000597901 CYP2D6P10635 497 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 PRKCZQ05513 592 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 RAB3GAP1Q15042 981 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 FAM110CQ1W6H9 321 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 USP17L2Q6R6M4 530 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 GPATCH3Q96I76 525 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 PUS7LQ9H0K6 701 aaKnown RBP18.18■□□□□ 0.5
LIG1-215ENST00000597901 DOCK1Q14185 1865 aa18.18■□□□□ 0.5
LIG1-215ENST00000597901 TNPO2O14787 897 aaKnown RBP18.17■□□□□ 0.5
LIG1-215ENST00000597901 GRK4P32298 578 aa18.17■□□□□ 0.5
LIG1-215ENST00000597901 TSHZ3Q63HK5 1081 aa18.17■□□□□ 0.5
LIG1-215ENST00000597901 GUCY1A2P33402 732 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 FLT3LGP49771 235 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 IRX3P78415 501 aaPredicted RBP18.16■□□□□ 0.5
LIG1-215ENST00000597901 KBTBD3Q8NAB2 608 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 ACER1Q8TDN7 264 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 DYNLL2Q96FJ2 89 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 SLC4A4Q9Y6R1 1079 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 PHIPQ8WWQ0 1821 aa18.16■□□□□ 0.5
LIG1-215ENST00000597901 SIPA1L1O43166 1804 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 USP17L12C9JPN9 530 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 USP17L21D6R901 530 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 SEPT2Q15019 361 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 MTFR1Q15390 333 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 C12orf60Q5U649 245 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 COA7Q96BR5 231 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 STRBPQ96SI9 672 aaKnown RBP18.15■□□□□ 0.5
LIG1-215ENST00000597901 KIAA1683Q9H0B3 1180 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 RBPJLQ9UBG7 517 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 MORF4L1Q9UBU8 362 aa18.15■□□□□ 0.5
LIG1-215ENST00000597901 BIN2Q9UBW5 565 aaPredicted RBP18.15■□□□□ 0.5
LIG1-215ENST00000597901 MPHOSPH10O00566 681 aaKnown RBP18.14■□□□□ 0.49
LIG1-215ENST00000597901 RNF113AO15541 343 aaKnown RBP18.14■□□□□ 0.49
LIG1-215ENST00000597901 ADCY3O60266 1144 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 USP14P54578 494 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 HERVK_113P62684 666 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 ZYXQ15942 572 aaKnown RBP18.14■□□□□ 0.49
LIG1-215ENST00000597901 SLC44A5Q8NCS7 719 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 OTUD7AQ8TE49 926 aaPredicted RBP18.14■□□□□ 0.49
LIG1-215ENST00000597901 C12orf42Q96LP6 360 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 FEZ1Q99689 392 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 SWAP70Q9UH65 585 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 TAOK2Q9UL54 1235 aa18.14■□□□□ 0.49
LIG1-215ENST00000597901 CYP2D7A0A087X1C5 515 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L15C9J2P7 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L13C9JLJ4 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L11C9JVI0 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L18D6R9N7 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L22D6RA61 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L17D6RBQ6 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L19D6RCP7 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L20D6RJB6 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 SMIM22K7EJ46 135 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 PEX10O60683 326 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 SLC34A2O95436 690 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 USP17L24Q0WX57 530 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 IRF5Q13568 498 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 ANKRD45Q5TZF3 282 aa18.13■□□□□ 0.49
LIG1-215ENST00000597901 SLAIN1Q8ND83 568 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms