RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RBM26Q5T8P6 1007 aaKnown RBP17.94■□□□□ 0.46
SS18-215ENST00000580642 DYNLL2Q96FJ2 89 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 INCENPQ9NQS7 918 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 PGAP2Q9UHJ9 254 aa17.94■□□□□ 0.46
SS18-215ENST00000580642 DHX16O60231 1041 aaKnown RBP17.93■□□□□ 0.46
SS18-215ENST00000580642 PRDM1O75626 825 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 EGFRP00533 1210 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 TSPY3P0CV98 308 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 TSPY8P0CW00 308 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 COL9A3Q14050 684 aaPredicted RBP17.93■□□□□ 0.46
SS18-215ENST00000580642 RASA3Q14644 834 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 WTAPQ15007 396 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 SEC23AQ15436 765 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 SYNE3Q6ZMZ3 975 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 PNMA8AQ86V59 439 aaPredicted RBP17.93■□□□□ 0.46
SS18-215ENST00000580642 LY9Q9HBG7 655 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 CWC22Q9HCG8 908 aaKnown RBP17.93■□□□□ 0.46
SS18-215ENST00000580642 GINM1Q9NU53 330 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 TPCN1Q9ULQ1 816 aa17.93■□□□□ 0.46
SS18-215ENST00000580642 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.93■□□□□ 0.46
SS18-215ENST00000580642 SMIM22K7EJ46 135 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 PFKFB2O60825 505 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 HSP90AA1P07900 732 aaKnown RBP17.92■□□□□ 0.46
SS18-215ENST00000580642 CALM1P0DP23 149 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 CALM2P0DP24 149 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 CALM3P0DP25 149 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 PDIA4P13667 645 aaKnown RBP17.92■□□□□ 0.46
SS18-215ENST00000580642 SHMT1P34896 483 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 CHST3Q7LGC8 479 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 TRPM4Q8TD43 1214 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 TCEANC2Q96MN5 208 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 DEFB129Q9H1M3 183 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 TNKSO95271 1327 aa17.92■□□□□ 0.46
SS18-215ENST00000580642 NID2Q14112 1375 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 CCDC69A6NI79 296 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 PDIA3P30101 505 aaKnown RBP17.91■□□□□ 0.46
SS18-215ENST00000580642 EPHX2P34913 555 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 EVX2Q03828 476 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 ME3Q16798 604 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 ENAHQ8N8S7 591 aaPredicted RBP17.91■□□□□ 0.46
SS18-215ENST00000580642 MAP3K14Q99558 947 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 LLPHQ9BRT6 129 aaKnown RBP17.91■□□□□ 0.46
SS18-215ENST00000580642 SLKQ9H2G2 1235 aaPredicted RBP17.91■□□□□ 0.46
SS18-215ENST00000580642 SYNPO2Q9UMS6 1093 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 SLC12A7Q9Y666 1083 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 SRCAPQ6ZRS2 3230 aa17.91■□□□□ 0.46
SS18-215ENST00000580642 CCDC196A0A1B0GTZ2 297 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 HIRAP54198 1017 aaPredicted RBP17.9■□□□□ 0.46
SS18-215ENST00000580642 CERKLQ49MI3 558 aaPredicted RBP17.9■□□□□ 0.46
SS18-215ENST00000580642 IFIT1BQ5T764 474 aaKnown RBP17.9■□□□□ 0.46
SS18-215ENST00000580642 ANGEL2Q5VTE6 544 aaKnown RBP17.9■□□□□ 0.46
SS18-215ENST00000580642 APOA5Q6Q788 366 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 STK11IPQ8N1F8 1099 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 SLC44A5Q8NCS7 719 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 GTF3C6Q969F1 213 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 TEPSINQ96N21 525 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 LRRC2Q9BYS8 371 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 TMEM39BQ9GZU3 492 aa17.9■□□□□ 0.46
SS18-215ENST00000580642 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.9■□□□□ 0.46
SS18-215ENST00000580642 IGKV6D-41A0A0C4DH26 115 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 KLF18A0A0U1RQI7 1052 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 ZBTB43O43298 467 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 DDAH1O94760 285 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 APOBRQ0VD83 1088 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 SLC4A8Q2Y0W8 1093 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 SUPT20HL1Q3ZLR7 823 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 FAM47AQ5JRC9 791 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 DCAF15Q66K64 600 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 NFXL1Q6ZNB6 911 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 TMEM179Q6ZVK1 233 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 CATIPQ7Z7H3 387 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 NKX2-3Q8TAU0 364 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 DCPSQ96C86 337 aaKnown RBP17.89■□□□□ 0.45
SS18-215ENST00000580642 DNAJC18Q9H819 358 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 GGA3Q9NZ52 723 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 WDR90Q96KV7 1748 aa17.89■□□□□ 0.45
SS18-215ENST00000580642 SCN4AP35499 1836 aa17.88■□□□□ 0.45
SS18-215ENST00000580642 CPLX2Q6PUV4 134 aaKnown RBP17.88■□□□□ 0.45
SS18-215ENST00000580642 TAF1DQ9H5J8 278 aaPredicted RBP17.88■□□□□ 0.45
SS18-215ENST00000580642 KANSL2Q9H9L4 492 aa17.88■□□□□ 0.45
SS18-215ENST00000580642 IL17RBQ9NRM6 502 aa17.88■□□□□ 0.45
SS18-215ENST00000580642 CIZ1Q9ULV3 898 aaPredicted RBP17.88■□□□□ 0.45
SS18-215ENST00000580642 TOP1P11387 765 aaKnown RBP17.87■□□□□ 0.45
SS18-215ENST00000580642 RCSD1Q6JBY9 416 aa17.87■□□□□ 0.45
SS18-215ENST00000580642 SULF1Q8IWU6 871 aa17.87■□□□□ 0.45
SS18-215ENST00000580642 RGS22Q8NE09 1264 aa17.87■□□□□ 0.45
SS18-215ENST00000580642 CABP5Q9NP86 173 aa17.87■□□□□ 0.45
SS18-215ENST00000580642 MTMR4Q9NYA4 1195 aa17.87■□□□□ 0.45
SS18-215ENST00000580642 BRPF3Q9ULD4 1205 aa17.87■□□□□ 0.45
SS18-215ENST00000580642 GOLGA8BA8MQT2 603 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 CDKL5O76039 1030 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 TTLL1O95922 423 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 AKR1B1P15121 316 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 HMGN5P82970 282 aaKnown RBP17.86■□□□□ 0.45
SS18-215ENST00000580642 ABCB5Q2M3G0 1257 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 NOL8Q76FK4 1167 aaKnown RBP17.86■□□□□ 0.45
SS18-215ENST00000580642 ZNF654Q8IZM8 581 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 MKL1Q969V6 931 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 ZKSCAN3Q9BRR0 538 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms