RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 FAM151AQ8WW52 585 aa35.91■■■■□ 3.34
CTCF-203ENST00000566078 ZNF274Q96GC6 653 aaPredicted RBP35.91■■■■□ 3.34
CTCF-203ENST00000566078 PI4KBQ9UBF8 816 aa35.91■■■■□ 3.34
CTCF-203ENST00000566078 GTF3C6Q969F1 213 aa35.9■■■■□ 3.34
CTCF-203ENST00000566078 PFKFB2O60825 505 aa35.9■■■■□ 3.34
CTCF-203ENST00000566078 TSPY3P0CV98 308 aa35.9■■■■□ 3.34
CTCF-203ENST00000566078 TSPY8P0CW00 308 aa35.9■■■■□ 3.34
CTCF-203ENST00000566078 SGMS1Q86VZ5 419 aa35.9■■■■□ 3.34
CTCF-203ENST00000566078 CRACR2BQ8N4Y2 399 aaPredicted RBP35.9■■■■□ 3.34
CTCF-203ENST00000566078 GOLGA8BA8MQT2 603 aa35.89■■■■□ 3.34
CTCF-203ENST00000566078 PDIA3P30101 505 aaKnown RBP35.89■■■■□ 3.34
CTCF-203ENST00000566078 SEC23AQ15436 765 aa35.89■■■■□ 3.34
CTCF-203ENST00000566078 FAM83AQ86UY5 434 aa35.89■■■■□ 3.34
CTCF-203ENST00000566078 ENAHQ8N8S7 591 aaPredicted RBP35.89■■■■□ 3.34
CTCF-203ENST00000566078 CCDC69A6NI79 296 aa35.88■■■■□ 3.33
CTCF-203ENST00000566078 POLR2AP24928 1970 aaKnown RBP35.88■■■■□ 3.33
CTCF-203ENST00000566078 NMT2O60551 498 aa35.87■■■■□ 3.33
CTCF-203ENST00000566078 EPS15P42566 896 aa35.87■■■■□ 3.33
CTCF-203ENST00000566078 TRPM4Q8TD43 1214 aa35.87■■■■□ 3.33
CTCF-203ENST00000566078 CSRNP1Q96S65 589 aa35.87■■■■□ 3.33
CTCF-203ENST00000566078 TRIM34Q9BYJ4 488 aa35.87■■■■□ 3.33
CTCF-203ENST00000566078 ZSCAN21Q9Y5A6 473 aaPredicted RBP35.87■■■■□ 3.33
CTCF-203ENST00000566078 LMOD1P29536 600 aaPredicted RBP35.86■■■■□ 3.33
CTCF-203ENST00000566078 SHMT1P34896 483 aa35.86■■■■□ 3.33
CTCF-203ENST00000566078 SCRN1Q12765 414 aa35.86■■■■□ 3.33
CTCF-203ENST00000566078 MYH4Q9Y623 1939 aa35.86■■■■□ 3.33
CTCF-203ENST00000566078 ASTN2O75129 1339 aaPredicted RBP35.86■■■■□ 3.33
CTCF-203ENST00000566078 ZC3H4Q9UPT8 1303 aaKnown RBP35.86■■■■□ 3.33
CTCF-203ENST00000566078 TNNI2P48788 182 aa35.86■■■■□ 3.33
CTCF-203ENST00000566078 TMTC2Q8N394 836 aa35.86■■■■□ 3.33
CTCF-203ENST00000566078 DNAJC18Q9H819 358 aa35.86■■■■□ 3.33
CTCF-203ENST00000566078 SLURP2P0DP57 97 aa35.85■■■■□ 3.33
CTCF-203ENST00000566078 IFIT1BQ5T764 474 aaKnown RBP35.85■■■■□ 3.33
CTCF-203ENST00000566078 APOA5Q6Q788 366 aa35.85■■■■□ 3.33
CTCF-203ENST00000566078 RAB11FIP4Q86YS3 637 aa35.85■■■■□ 3.33
CTCF-203ENST00000566078 TMEM39BQ9GZU3 492 aa35.85■■■■□ 3.33
CTCF-203ENST00000566078 HACL1Q9UJ83 578 aa35.85■■■■□ 3.33
CTCF-203ENST00000566078 FAM196BA6NMK8 535 aa35.84■■■■□ 3.33
CTCF-203ENST00000566078 DDIT3P35638 169 aa35.84■■■■□ 3.33
CTCF-203ENST00000566078 CCT2P78371 535 aaKnown RBP35.84■■■■□ 3.33
CTCF-203ENST00000566078 TNFAIP1Q13829 316 aa35.84■■■■□ 3.33
CTCF-203ENST00000566078 FOXP4Q8IVH2 680 aaPredicted RBP35.84■■■■□ 3.33
CTCF-203ENST00000566078 TAOK2Q9UL54 1235 aa35.84■■■■□ 3.33
CTCF-203ENST00000566078 SLC12A7Q9Y666 1083 aa35.84■■■■□ 3.33
CTCF-203ENST00000566078 DPY19L2Q6NUT2 758 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 CWC22Q9HCG8 908 aaKnown RBP35.83■■■■□ 3.33
CTCF-203ENST00000566078 HPS5Q9UPZ3 1129 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 SCN4AP35499 1836 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 PLIN4Q96Q06 1357 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 NEDD1Q8NHV4 660 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 IL17RBQ9NRM6 502 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 TCP11L1Q9NUJ3 509 aa35.83■■■■□ 3.33
CTCF-203ENST00000566078 CCDC178Q5BJE1 867 aa35.82■■■■□ 3.32
CTCF-203ENST00000566078 MICU3Q86XE3 530 aa35.82■■■■□ 3.32
CTCF-203ENST00000566078 NCOA5Q9HCD5 579 aaKnown RBP35.82■■■■□ 3.32
CTCF-203ENST00000566078 SCAF8Q9UPN6 1271 aaKnown RBP35.82■■■■□ 3.32
CTCF-203ENST00000566078 SMC3Q9UQE7 1217 aa35.82■■■■□ 3.32
CTCF-203ENST00000566078 ATAD5Q96QE3 1844 aa35.81■■■■□ 3.32
CTCF-203ENST00000566078 ZBTB43O43298 467 aa35.81■■■■□ 3.32
CTCF-203ENST00000566078 SYNE3Q6ZMZ3 975 aa35.81■■■■□ 3.32
CTCF-203ENST00000566078 METTL16Q86W50 562 aaKnown RBP35.81■■■■□ 3.32
CTCF-203ENST00000566078 MYL10Q9BUA6 226 aa35.81■■■■□ 3.32
CTCF-203ENST00000566078 AKR1B1P15121 316 aa35.8■■■■□ 3.32
CTCF-203ENST00000566078 ZNF654Q8IZM8 581 aa35.8■■■■□ 3.32
CTCF-203ENST00000566078 MYH6P13533 1939 aa35.8■■■■□ 3.32
CTCF-203ENST00000566078 RXRAP19793 462 aa35.79■■■■□ 3.32
CTCF-203ENST00000566078 METAP2P50579 478 aaKnown RBP eCLIP35.79■■■■□ 3.32
CTCF-203ENST00000566078 RASA3Q14644 834 aa35.79■■■■□ 3.32
CTCF-203ENST00000566078 ADARB2Q9NS39 739 aaKnown RBP35.79■■■■□ 3.32
CTCF-203ENST00000566078 ANGEL2Q5VTE6 544 aaKnown RBP35.79■■■■□ 3.32
CTCF-203ENST00000566078 RCSD1Q6JBY9 416 aa35.79■■■■□ 3.32
CTCF-203ENST00000566078 CDAN1Q8IWY9 1227 aa35.79■■■■□ 3.32
CTCF-203ENST00000566078 HERC5Q9UII4 1024 aaKnown RBP35.79■■■■□ 3.32
CTCF-203ENST00000566078 DTNBO60941 627 aa35.78■■■■□ 3.32
CTCF-203ENST00000566078 DGKHQ86XP1 1220 aa35.78■■■■□ 3.32
CTCF-203ENST00000566078 CHMP5Q9NZZ3 219 aa35.78■■■■□ 3.32
CTCF-203ENST00000566078 PGAP2Q9UHJ9 254 aa35.78■■■■□ 3.32
CTCF-203ENST00000566078 NID2Q14112 1375 aa35.77■■■■□ 3.32
CTCF-203ENST00000566078 GOLGA8AA7E2F4 631 aa35.77■■■■□ 3.32
CTCF-203ENST00000566078 HIRAP54198 1017 aaPredicted RBP35.77■■■■□ 3.32
CTCF-203ENST00000566078 TATDN1Q6P1N9 297 aa35.77■■■■□ 3.32
CTCF-203ENST00000566078 L3MBTL3Q96JM7 780 aaPredicted RBP35.77■■■■□ 3.32
CTCF-203ENST00000566078 CIZ1Q9ULV3 898 aaPredicted RBP35.77■■■■□ 3.32
CTCF-203ENST00000566078 APOBEC3FQ8IUX4 373 aaKnown RBP35.76■■■■□ 3.32
CTCF-203ENST00000566078 CCDC144CPQ8IYA2 1237 aa35.76■■■■□ 3.32
CTCF-203ENST00000566078 CHMP4CQ96CF2 233 aa35.76■■■■□ 3.32
CTCF-203ENST00000566078 XPO5Q9HAV4 1204 aaKnown RBP eCLIP35.76■■■■□ 3.324e-19■■■□□ 16.9
CTCF-203ENST00000566078 WDR90Q96KV7 1748 aa35.76■■■■□ 3.31
CTCF-203ENST00000566078 GJB2P29033 226 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 CERKLQ49MI3 558 aaPredicted RBP35.75■■■■□ 3.31
CTCF-203ENST00000566078 CATIPQ7Z7H3 387 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 CCDC17Q96LX7 622 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 LLPHQ9BRT6 129 aaKnown RBP35.75■■■■□ 3.31
CTCF-203ENST00000566078 GNL3Q9BVP2 549 aaKnown RBP eCLIP35.75■■■■□ 3.31
CTCF-203ENST00000566078 GGA3Q9NZ52 723 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 GLTPD2A6NH11 291 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 MPHOSPH10O00566 681 aaKnown RBP35.75■■■■□ 3.31
CTCF-203ENST00000566078 ANKS1AQ92625 1134 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 CEP95Q96GE4 821 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 KAT14Q9H8E8 782 aa35.75■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms