RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PI16Q6UXB8 463 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 TICAM2Q86XR7 235 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 PXYLP1Q8TE99 480 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 DIS3LQ8TF46 1054 aaKnown RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 RUFY2Q8WXA3 655 aa14.16□□□□□ -0.14
LDLR-212ENST00000560467 FAM163AQ96GL9 167 aaPredicted RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 ZNF512BQ96KM6 892 aaPredicted RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 PAK6Q9NQU5 681 aaPredicted RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.16□□□□□ -0.14
LDLR-212ENST00000560467 PDS5AQ29RF7 1337 aaKnown RBP14.15□□□□□ -0.14
LDLR-212ENST00000560467 SALL3Q9BXA9 1300 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 GPR75-ASB3A0A0A6YYF3 556 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 SOX1O00570 391 aaPredicted RBP14.15□□□□□ -0.14
LDLR-212ENST00000560467 EVI5O60447 810 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 SPTY2D1Q68D10 685 aaPredicted RBP14.15□□□□□ -0.14
LDLR-212ENST00000560467 SLF2Q8IX21 1173 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 PI4K2BQ8TCG2 481 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 DNAJC2Q99543 621 aaKnown RBP14.15□□□□□ -0.14
LDLR-212ENST00000560467 HAUS7Q99871 368 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 FSD1Q9BTV5 496 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.15□□□□□ -0.144e-11■■□□□ 14.5
LDLR-212ENST00000560467 TLR7Q9NYK1 1049 aaKnown RBP14.15□□□□□ -0.14
LDLR-212ENST00000560467 LAMA3Q16787 3333 aa14.15□□□□□ -0.14
LDLR-212ENST00000560467 MYH13Q9UKX3 1938 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 DOCK2Q92608 1830 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 SPP2Q13103 211 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 RRP1BQ14684 758 aaKnown RBP14.14□□□□□ -0.15
LDLR-212ENST00000560467 FAM110CQ1W6H9 321 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 ZSCAN25Q6NSZ9 544 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 TBC1D9Q6ZT07 1266 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 ERICH6Q7L0X2 663 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 COA7Q96BR5 231 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 CRISPLD2Q9H0B8 497 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.14□□□□□ -0.15
LDLR-212ENST00000560467 DIAPH3Q9NSV4 1193 aa14.14□□□□□ -0.15
LDLR-212ENST00000560467 TBC1D12O60347 775 aa14.13□□□□□ -0.15
LDLR-212ENST00000560467 HMGCS2P54868 508 aa14.13□□□□□ -0.15
LDLR-212ENST00000560467 PAWRQ96IZ0 340 aaKnown RBP14.13□□□□□ -0.15
LDLR-212ENST00000560467 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.13□□□□□ -0.159e-6■□□□□ 8.2
LDLR-212ENST00000560467 PAG1Q9NWQ8 432 aa14.13□□□□□ -0.15
LDLR-212ENST00000560467 HMG20BQ9P0W2 317 aa14.13□□□□□ -0.15
LDLR-212ENST00000560467 PNMA3Q9UL41 463 aa14.13□□□□□ -0.15
LDLR-212ENST00000560467 AK9Q5TCS8 1911 aa14.13□□□□□ -0.15
LDLR-212ENST00000560467 MAP4K4O95819 1239 aaPredicted RBP14.12□□□□□ -0.15
LDLR-212ENST00000560467 GSPT1P15170 499 aaKnown RBP14.12□□□□□ -0.15
LDLR-212ENST00000560467 TRIM32Q13049 653 aa14.12□□□□□ -0.15
LDLR-212ENST00000560467 KIAA1211Q6ZU35 1233 aa14.12□□□□□ -0.15
LDLR-212ENST00000560467 PROCA1Q8NCQ7 364 aaPredicted RBP14.12□□□□□ -0.15
LDLR-212ENST00000560467 ZNF280CQ8ND82 737 aa14.12□□□□□ -0.15
LDLR-212ENST00000560467 NSUN4Q96CB9 384 aaKnown RBP14.12□□□□□ -0.15
LDLR-212ENST00000560467 LRCH3Q96II8 777 aa14.12□□□□□ -0.15
LDLR-212ENST00000560467 BACH2Q9BYV9 841 aa14.12□□□□□ -0.15
LDLR-212ENST00000560467 GOLIM4O00461 696 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 PEX10O60683 326 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 NPM3O75607 178 aaKnown RBP14.11□□□□□ -0.15
LDLR-212ENST00000560467 REC8O95072 547 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 HMGCRP04035 888 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 ZFYP08048 801 aaPredicted RBP14.11□□□□□ -0.15
LDLR-212ENST00000560467 ARID4AP29374 1257 aaPredicted RBP14.11□□□□□ -0.15
LDLR-212ENST00000560467 DOCK1Q14185 1865 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 SPATA5Q8NB90 893 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 OSBPL5Q9H0X9 879 aaPredicted RBP14.11□□□□□ -0.15
LDLR-212ENST00000560467 ASCC2Q9H1I8 757 aaPredicted RBP14.11□□□□□ -0.15
LDLR-212ENST00000560467 RAI14Q9P0K7 980 aa14.11□□□□□ -0.15
LDLR-212ENST00000560467 A0A1W2PPC1 479 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 CAP2P40123 477 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 GCLCP48506 637 aaPredicted RBP14.1□□□□□ -0.15
LDLR-212ENST00000560467 MFAP1P55081 439 aaKnown RBP14.1□□□□□ -0.15
LDLR-212ENST00000560467 GSTO1P78417 241 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 MAP3K12Q12852 859 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 NECAB2Q7Z6G3 386 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 TEX11Q8IYF3 940 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 C7orf61Q8IZ16 206 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 SH3RF3Q8TEJ3 882 aaPredicted RBP14.1□□□□□ -0.15
LDLR-212ENST00000560467 GJD2Q9UKL4 321 aa14.1□□□□□ -0.15
LDLR-212ENST00000560467 ZMYND8Q9ULU4 1186 aaPredicted RBP14.1□□□□□ -0.15
LDLR-212ENST00000560467 MYH2Q9UKX2 1941 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 USP17L5A8MUK1 530 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 IGSF3O75054 1194 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 MCAMP43121 646 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 MTMR2Q13614 643 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 KBTBD3Q8NAB2 608 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 SNRKQ9NRH2 765 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 LRP2BPQ9P2M1 347 aa14.09□□□□□ -0.15
LDLR-212ENST00000560467 COL2A1P02458 1487 aaPredicted RBP14.09□□□□□ -0.15
LDLR-212ENST00000560467 PHIPQ8WWQ0 1821 aa14.08□□□□□ -0.15
LDLR-212ENST00000560467 MGAMO43451 1857 aa14.08□□□□□ -0.16
LDLR-212ENST00000560467 PTPRFP10586 1907 aa14.08□□□□□ -0.16
LDLR-212ENST00000560467 LDHCP07864 332 aa14.08□□□□□ -0.16
LDLR-212ENST00000560467 MNX1P50219 401 aaPredicted RBP14.08□□□□□ -0.16
LDLR-212ENST00000560467 JAG1P78504 1218 aa14.08□□□□□ -0.16
LDLR-212ENST00000560467 PABPC4Q13310 644 aaKnown RBP eCLIP14.08□□□□□ -0.16
LDLR-212ENST00000560467 SHROOM1Q2M3G4 852 aaPredicted RBP14.08□□□□□ -0.16
LDLR-212ENST00000560467 SH3D19Q5HYK7 790 aa14.08□□□□□ -0.16
LDLR-212ENST00000560467 TMED8Q6PL24 325 aaPredicted RBP14.08□□□□□ -0.16
LDLR-212ENST00000560467 TRIB2Q92519 343 aa14.08□□□□□ -0.16
LDLR-212ENST00000560467 CAPN2P17655 700 aa14.07□□□□□ -0.16
LDLR-212ENST00000560467 CYP2B6P20813 491 aa14.07□□□□□ -0.16
LDLR-212ENST00000560467 CHMLP26374 656 aa14.07□□□□□ -0.16
LDLR-212ENST00000560467 ZAP70P43403 619 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms