RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 UBN2Q6ZU65 1347 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 H0YHG0 523 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 RTN1Q16799 776 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 BEND6Q5SZJ8 279 aaPredicted RBP12.84□□□□□ -0.35
LDLR-208ENST00000558518 TOM1L2Q6ZVM7 507 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 IFNL2Q8IZJ0 200 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 THEMISQ8N1K5 641 aaPredicted RBP12.84□□□□□ -0.35
LDLR-208ENST00000558518 PLBD2Q8NHP8 589 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 CHP1Q99653 195 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 ZMYM6O95789 1325 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 MBD4O95243 580 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 CCT5P48643 541 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 MAGEB6Q8N7X4 407 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 ACBD3Q9H3P7 528 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 ZSWIM5Q9P217 1185 aa12.84□□□□□ -0.35
LDLR-208ENST00000558518 CD44P16070 742 aaKnown RBP12.83□□□□□ -0.35
LDLR-208ENST00000558518 MLKLQ8NB16 471 aa12.83□□□□□ -0.35
LDLR-208ENST00000558518 GNL3LQ9NVN8 582 aaKnown RBP12.83□□□□□ -0.35
LDLR-208ENST00000558518 EIF5P55010 431 aaKnown RBP12.83□□□□□ -0.36
LDLR-208ENST00000558518 CCDC122Q5T0U0 273 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 DEF6Q9H4E7 631 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 NBPF26B4DH59 902 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 ZNF185O15231 689 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 ZEB2O60315 1214 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 IVLP07476 585 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 MNAT1P51948 309 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 RNASE9P60153 205 aaKnown RBP12.83□□□□□ -0.36
LDLR-208ENST00000558518 NBPF14Q5TI25 921 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 NBPF10Q6P3W6 841 aaKnown RBP12.83□□□□□ -0.36
LDLR-208ENST00000558518 NBPF15Q8N660 670 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 ANKRD20A12PQ8NF67 263 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 UBAC1Q9BSL1 405 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 AGXT2Q9BYV1 514 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 TBX22Q9Y458 520 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 UTYO14607 1347 aa12.83□□□□□ -0.36
LDLR-208ENST00000558518 PHKG2P15735 406 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 MCAMP43121 646 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 KRT28Q7Z3Y7 464 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 PACS2Q86VP3 889 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 ARHGEF25Q86VW2 580 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 AFAP1L1Q8TED9 768 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 MYO6Q9UM54 1294 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 RGPD8O14715 1765 aaPredicted RBP12.82□□□□□ -0.36
LDLR-208ENST00000558518 SPATA31D1Q6ZQQ2 1576 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 AGLP35573 1532 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 FOXP2O15409 715 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 PPP6R2O75170 966 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 IPO7O95373 1038 aaKnown RBP12.82□□□□□ -0.36
LDLR-208ENST00000558518 CXCR5P32302 372 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 MCM7P33993 719 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 CYP27A1Q02318 531 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 WTAPQ15007 396 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 MFSD6Q6ZSS7 791 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 LOC102724159A0A0B4J2E5 919 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 SMIM22K7EJ46 135 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 RNF225M0QZC1 329 aaPredicted RBP12.82□□□□□ -0.36
LDLR-208ENST00000558518 PHKA1P46020 1223 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 PWP2Q15269 919 aaKnown RBP12.82□□□□□ -0.36
LDLR-208ENST00000558518 SYMPKQ92797 1274 aaKnown RBP12.82□□□□□ -0.36
LDLR-208ENST00000558518 MED15Q96RN5 788 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 MAP3K14Q99558 947 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 PIH1D3Q9NQM4 214 aaKnown RBP12.82□□□□□ -0.36
LDLR-208ENST00000558518 HPSEQ9Y251 543 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 JRKLQ9Y4A0 524 aa12.82□□□□□ -0.36
LDLR-208ENST00000558518 SH2B2O14492 632 aaPredicted RBP12.81□□□□□ -0.36
LDLR-208ENST00000558518 TOB1P50616 345 aaPredicted RBP12.81□□□□□ -0.36
LDLR-208ENST00000558518 SLC7A5Q01650 507 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 KCTD16Q68DU8 428 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 STRN4Q9NRL3 753 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 ATP1A2P50993 1020 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 PLCD1P51178 756 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 PPARAQ07869 468 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.81□□□□□ -0.36
LDLR-208ENST00000558518 FCHSD1Q86WN1 690 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 ANKRD13CQ8N6S4 541 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 SMARCAL1Q9NZC9 954 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 V9GY48 417 aaPredicted RBP12.81□□□□□ -0.36
LDLR-208ENST00000558518 TRIM49BA6NDI0 452 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 TRIM75PA6NK02 468 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 ATP8B1O43520 1251 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 KCNJ6P48051 423 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 C2orf54Q08AI8 447 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 RABL6Q3YEC7 729 aaPredicted RBP12.81□□□□□ -0.36
LDLR-208ENST00000558518 MUM1L1Q5H9M0 696 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 ENOX1Q8TC92 643 aaKnown RBP12.81□□□□□ -0.36
LDLR-208ENST00000558518 RUFY1Q96T51 708 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 KCND1Q9NSA2 647 aa12.81□□□□□ -0.36
LDLR-208ENST00000558518 AKAP12Q02952 1782 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 MFAP3LO75121 409 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 PTPROQ16827 1216 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 LRRC31Q6UY01 552 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 CACNA1FO60840 1977 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 CYP27B1O15528 508 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 ATP2C2O75185 946 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 GYPCP04921 128 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 STIM1Q13586 685 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 NR1I3Q14994 352 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 SDR42E1Q8WUS8 393 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 GBP3Q9H0R5 595 aa12.8□□□□□ -0.36
LDLR-208ENST00000558518 L1RE1Q9UN81 338 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms