RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 USP17L12C9JPN9 530 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 USP17L21D6R901 530 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 K7ELQ4 463 aaPredicted RBP9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 TK2O00142 265 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 DPYSL4O14531 572 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 WDHD1O75717 1129 aaPredicted RBP9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 TOMM70O94826 608 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 USP17L8P0C7I0 530 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 USP5P45974 858 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 ANTXR2P58335 489 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 EXOSC10Q01780 885 aaKnown RBP9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 TOB2Q14106 344 aaPredicted RBP9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 BECN1Q14457 450 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 NOL8Q76FK4 1167 aaKnown RBP9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 AGBL3Q8NEM8 1001 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 PDRG1Q9NUG6 133 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 ARPP21Q9UBL0 812 aaPredicted RBP9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 CYP46A1Q9Y6A2 500 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 ROBO3Q96MS0 1386 aa9.59□□□□□ -0.87
DEPDC4-207ENST00000549249 MINDY4BA8MYZ0 360 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 B4E1Z4 1266 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 LARGE1O95461 756 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 LMNB1P20700 586 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 APLP1P51693 650 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 NFIAQ12857 509 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 TNIP1Q15025 636 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 E2F4Q16254 413 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 SLC4A8Q2Y0W8 1093 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 AKNAD1Q5T1N1 836 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 C12orf60Q5U649 245 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 C9orf131Q5VYM1 1079 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 CYB5R4Q7L1T6 521 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 STK11IPQ8N1F8 1099 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 NCOA7Q8NI08 942 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 ZBED3Q96IU2 234 aaPredicted RBP9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 LRRC2Q9BYS8 371 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 ALDH8A1Q9H2A2 487 aaPredicted RBP9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 USP40Q9NVE5 1235 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 MCM9Q9NXL9 1143 aa9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 SAP30BPQ9UHR5 308 aaKnown RBP9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.58□□□□□ -0.88
DEPDC4-207ENST00000549249 GREB1LQ9C091 1923 aaPredicted RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 HMGB1P09429 215 aaKnown RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 FGRP09769 529 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 PLCD1P51178 756 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 RBM5P52756 815 aaKnown RBP eCLIP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 CACNB3P54284 484 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 EIF6P56537 245 aaKnown RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 ST3GAL1Q11201 340 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 PICALMQ13492 652 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 DHX32Q7L7V1 743 aaKnown RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 CHST3Q7LGC8 479 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 MTMR14Q8NCE2 650 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 IL27Q8NEV9 243 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 TMX3Q96JJ7 454 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 PRMT6Q96LA8 375 aaPredicted RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 IDI2Q9BXS1 227 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 AGXT2Q9BYV1 514 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 TDRD3Q9H7E2 651 aaKnown RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 FAM198AQ9UFP1 575 aa9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 POLR2AP24928 1970 aaKnown RBP9.57□□□□□ -0.88
DEPDC4-207ENST00000549249 PRC1O43663 620 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 EGFRP00533 1210 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 RPS12P25398 132 aaKnown RBP9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 MCM2P49736 904 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 PSEN2P49810 448 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 GMPSP49915 693 aaPredicted RBP9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 ZNF280AP59817 542 aaPredicted RBP9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 PPP4R3BQ5MIZ7 849 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 Q6ZUG5 572 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 RALYLQ86SE5 291 aaKnown RBP9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 ZFPM1Q8IX07 1006 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 ZNF454Q8N9F8 522 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 SLC44A5Q8NCS7 719 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 DYNLL2Q96FJ2 89 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 OSBPL5Q9H0X9 879 aaPredicted RBP9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 RNF181Q9P0P0 153 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 HDAC9Q9UKV0 1011 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 TPCN1Q9ULQ1 816 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 WDR19Q8NEZ3 1342 aa9.56□□□□□ -0.88
DEPDC4-207ENST00000549249 COL2A1P02458 1487 aaPredicted RBP9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 ORC4O43929 436 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 KDM4AO75164 1064 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 PRDM1O75626 825 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 POLR3DP05423 398 aaPredicted RBP9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 MCM5P33992 734 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 GABPAQ06546 454 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 CUL4AQ13619 759 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 DLGAP5Q15398 846 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 ME3Q16798 604 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 RRP12Q5JTH9 1297 aaKnown RBP9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 IFFO2Q5TF58 517 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 MFSD6Q6ZSS7 791 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 C16orf86Q6ZW13 317 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 SH3BP5LQ7L8J4 393 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 FBXL16Q8N461 479 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 OGFOD1Q8N543 542 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 RBM46Q8TBY0 533 aaKnown RBP9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 DPF2Q92785 391 aa9.55□□□□□ -0.88
DEPDC4-207ENST00000549249 BRF1Q92994 677 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms