RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 DNAJC18Q9H819 358 aa11.34□□□□□ -0.59
YBX3-218ENST00000546298 CABP5Q9NP86 173 aa11.34□□□□□ -0.59
YBX3-218ENST00000546298 ZBTB21Q9ULJ3 1066 aa11.34□□□□□ -0.59
YBX3-218ENST00000546298 MYH2Q9UKX2 1941 aa11.34□□□□□ -0.59
YBX3-218ENST00000546298 MYH13Q9UKX3 1938 aa11.34□□□□□ -0.59
YBX3-218ENST00000546298 GDF11O95390 407 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 MYCP01106 439 aaPredicted RBP11.33□□□□□ -0.6
YBX3-218ENST00000546298 POLR3DP05423 398 aaPredicted RBP11.33□□□□□ -0.6
YBX3-218ENST00000546298 HOXA7P31268 230 aaPredicted RBP11.33□□□□□ -0.6
YBX3-218ENST00000546298 PRKCZQ05513 592 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 MTMR2Q13614 643 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 C20orf194Q5TEA3 1177 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 TATDN1Q6P1N9 297 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 USP17L2Q6R6M4 530 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 PXYLP1Q8TE99 480 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 GTF3C2Q8WUA4 911 aaPredicted RBP11.33□□□□□ -0.6
YBX3-218ENST00000546298 RIOK1Q9BRS2 568 aaKnown RBP11.33□□□□□ -0.6
YBX3-218ENST00000546298 ASCC2Q9H1I8 757 aaPredicted RBP11.33□□□□□ -0.6
YBX3-218ENST00000546298 BOLA2Q9H3K6 86 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 PAG1Q9NWQ8 432 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 TAOK2Q9UL54 1235 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 LAMB1P07942 1786 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 ZNF532Q9HCE3 1301 aa11.33□□□□□ -0.6
YBX3-218ENST00000546298 ADCY3O60266 1144 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 GH2P01242 217 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 CAPN2P17655 700 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 FLT3LGP49771 235 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 IRF5Q13568 498 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 CERKLQ49MI3 558 aaPredicted RBP11.32□□□□□ -0.6
YBX3-218ENST00000546298 ZSCAN25Q6NSZ9 544 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 FEZ1Q99689 392 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 HAUS7Q99871 368 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 MCM9Q9NXL9 1143 aa11.32□□□□□ -0.6
YBX3-218ENST00000546298 AK9Q5TCS8 1911 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 GJB1P08034 283 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 USP14P54578 494 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 JAG1P78504 1218 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 UBE3CQ15386 1083 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 ABCB5Q2M3G0 1257 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 AMOTL1Q8IY63 956 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 DDRGK1Q96HY6 314 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 GPATCH3Q96I76 525 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 RNF208Q9H0X6 261 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 DCTPP1Q9H773 170 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 GABRQQ9UN88 632 aa11.31□□□□□ -0.6
YBX3-218ENST00000546298 ADD2P35612 726 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 PLCD1P51178 756 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 RAB3GAP1Q15042 981 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 MTFR1Q15390 333 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 CCAR1Q8IX12 1150 aaKnown RBP11.3□□□□□ -0.6
YBX3-218ENST00000546298 GPRC5AQ8NFJ5 357 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 GCC1Q96CN9 775 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 C12orf42Q96LP6 360 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 P2RX7Q99572 595 aaKnown RBP11.3□□□□□ -0.6
YBX3-218ENST00000546298 ATP8A2Q9NTI2 1148 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 ECHDC1Q9NTX5 307 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 MORF4L1Q9UBU8 362 aa11.3□□□□□ -0.6
YBX3-218ENST00000546298 TCRBV5S4A2TA0A5A2 114 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L15C9J2P7 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L13C9JLJ4 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L11C9JVI0 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L18D6R9N7 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L22D6RA61 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L17D6RBQ6 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L19D6RCP7 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L20D6RJB6 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 CCL5P13501 91 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 GJA8P48165 433 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 HERVK_113P62684 666 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 GABPAQ06546 454 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 USP17L24Q0WX57 530 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 LCORLQ8N3X6 602 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 EDC3Q96F86 508 aaKnown RBP11.29□□□□□ -0.6
YBX3-218ENST00000546298 KIAA1683Q9H0B3 1180 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 ARMT1Q9H993 441 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 DCP1AQ9NPI6 582 aaPredicted RBP11.29□□□□□ -0.6
YBX3-218ENST00000546298 EMILIN3Q9NT22 766 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 SWAP70Q9UH65 585 aa11.29□□□□□ -0.6
YBX3-218ENST00000546298 KIAA0100Q14667 2235 aaKnown RBP11.28□□□□□ -0.6
YBX3-218ENST00000546298 DOCK2Q92608 1830 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 MBD4O95243 580 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 ELNP15502 786 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 MAPK4P31152 587 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 SHMT1P34896 483 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 CCNA1P78396 465 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 SHROOM1Q2M3G4 852 aaPredicted RBP11.28□□□□□ -0.6
YBX3-218ENST00000546298 LRRFIP1Q32MZ4 808 aaKnown RBP11.28□□□□□ -0.6
YBX3-218ENST00000546298 SDR42E1Q8WUS8 393 aa11.28□□□□□ -0.6
YBX3-218ENST00000546298 MPHOSPH10O00566 681 aaKnown RBP11.27□□□□□ -0.61
YBX3-218ENST00000546298 SMARCA5O60264 1052 aaPredicted RBP11.27□□□□□ -0.61
YBX3-218ENST00000546298 SGPL1O95470 568 aa11.27□□□□□ -0.61
YBX3-218ENST00000546298 INHAP05111 366 aa11.27□□□□□ -0.61
YBX3-218ENST00000546298 ZYXQ15942 572 aaKnown RBP11.27□□□□□ -0.61
YBX3-218ENST00000546298 TMEM179Q6ZVK1 233 aa11.27□□□□□ -0.61
YBX3-218ENST00000546298 TRMT44Q8IYL2 757 aaKnown RBP11.27□□□□□ -0.61
YBX3-218ENST00000546298 U2AF1L4Q8WU68 220 aaKnown RBP11.27□□□□□ -0.61
YBX3-218ENST00000546298 SOCS4Q8WXH5 440 aa11.27□□□□□ -0.61
YBX3-218ENST00000546298 CCDC17Q96LX7 622 aa11.27□□□□□ -0.61
YBX3-218ENST00000546298 NUDT12Q9BQG2 462 aa11.27□□□□□ -0.61
YBX3-218ENST00000546298 HTATIP2Q9BUP3 242 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms