RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-213	ENST00000542641	TBC1D10C	Q8IV04	446 aa		13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	KLRG1	Q96E93	195 aa		13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	UPF2	Q9HAU5	1272 aa	Known RBP	13.74	□□□□□ -0.21
YBX3-213	ENST00000542641		E7EWF7	191 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	UBE2Q2L	H0YL09	131 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	FGR	P09769	529 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	MAP3K9	P80192	1104 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	TRDN	Q13061	729 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	MAP3K11	Q16584	847 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	RRP12	Q5JTH9	1297 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	PLCD3	Q8N3E9	789 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	ZNF112	Q9UJU3	913 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	TACC3	Q9Y6A5	838 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	TAF6L	Q9Y6J9	622 aa		13.73	□□□□□ -0.21
YBX3-213	ENST00000542641	TMEM88B	A6NKF7	163 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	MPHOSPH10	O00566	681 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	ORC4	O43929	436 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	RANBP6	O60518	1105 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	CTNND1	O60716	968 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	GDF11	O95390	407 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	RASA1	P20936	1047 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	INPP5B	P32019	993 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	RRP1B	Q14684	758 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	ABCB5	Q2M3G0	1257 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	ANKRD13A	Q8IZ07	590 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	RASEF	Q8IZ41	740 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	CCDC17	Q96LX7	622 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	KRT23	Q9C075	422 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	CNNM2	Q9H8M5	875 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	CSAD	Q9Y600	493 aa		13.72	□□□□□ -0.21
YBX3-213	ENST00000542641	NEDD4	P46934	1319 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	TSPY3	P0CV98	308 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	TSPY8	P0CW00	308 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	AKR1B1	P15121	316 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	CAP2	P40123	477 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	TFAP4	Q01664	338 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	KRT32	Q14532	448 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	TSGA10IP	Q3SY00	556 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	FAM47A	Q5JRC9	791 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	LDLRAD1	Q5T700	205 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	RALYL	Q86SE5	291 aa	Known RBP	13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	NCOA7	Q8NI08	942 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	ESR2	Q92731	530 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	KCNB2	Q92953	911 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	CABP5	Q9NP86	173 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	CREBZF	Q9NS37	354 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	SNX14	Q9Y5W7	946 aa		13.71	□□□□□ -0.21
YBX3-213	ENST00000542641	SIPA1L1	O43166	1804 aa		13.71	□□□□□ -0.22
YBX3-213	ENST00000542641	UNCX	A6NJT0	531 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	TSPY2	A6NKD2	308 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641		B4E1Z4	1266 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	GH2	P01242	217 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	ASNS	P08243	561 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	PRKAR2A	P13861	404 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	NT5C2	P49902	561 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	APLP1	P51693	650 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	HUNK	P57058	714 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	JAG1	P78504	1218 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	VGLL4	Q14135	290 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	STOX1	Q6ZVD7	989 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	SCYL3	Q8IZE3	742 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	C22orf23	Q9BZE7	217 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	PICK1	Q9NRD5	415 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	GINM1	Q9NU53	330 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	ABT1	Q9ULW3	272 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	LAMB1	P07942	1786 aa		13.7	□□□□□ -0.22
YBX3-213	ENST00000542641	KDM4A	O75164	1064 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	RAB3GAP1	Q15042	981 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	ADCK5	Q3MIX3	580 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	NOL9	Q5SY16	702 aa	Known RBP	13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	TMEM179	Q6ZVK1	233 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	SAPCD2	Q86UD0	394 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	NEDD1	Q8NHV4	660 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	SLC10A4	Q96EP9	437 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	CLMN	Q96JQ2	1002 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	NEK1	Q96PY6	1258 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	ELP3	Q9H9T3	547 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	ZSWIM5	Q9P217	1185 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	ZBTB21	Q9ULJ3	1066 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	TLL2	Q9Y6L7	1015 aa		13.69	□□□□□ -0.22
YBX3-213	ENST00000542641	PAPPA2	Q9BXP8	1791 aa		13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	PSMA5	P28066	241 aa		13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	ANAPC15	P60006	121 aa		13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	SEPT2	Q15019	361 aa		13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	NKX2-3	Q8TAU0	364 aa		13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	JAKMIP1	Q96N16	626 aa	Known RBP	13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	SNCAIP	Q9Y6H5	919 aa		13.68	□□□□□ -0.22
YBX3-213	ENST00000542641	LAMA4	Q16363	1823 aa		13.67	□□□□□ -0.22
YBX3-213	ENST00000542641	USP17L5	A8MUK1	530 aa		13.67	□□□□□ -0.22
YBX3-213	ENST00000542641	HMGB1	P09429	215 aa	Known RBP	13.67	□□□□□ -0.22
YBX3-213	ENST00000542641	PTPRA	P18433	802 aa		13.67	□□□□□ -0.22
YBX3-213	ENST00000542641	MCM5	P33992	734 aa		13.67	□□□□□ -0.22
YBX3-213	ENST00000542641	C1QTNF8	P60827	252 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms