RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 SLC26A8Q96RN1 970 aa9.59□□□□□ -0.87
RFC1-213ENST00000512275 GINM1Q9NU53 330 aa9.59□□□□□ -0.87
RFC1-213ENST00000512275 CPS1P31327 1500 aa9.59□□□□□ -0.87
RFC1-213ENST00000512275 STRCQ7RTU9 1775 aa9.59□□□□□ -0.87
RFC1-213ENST00000512275 NPHP4O75161 1426 aaPredicted RBP9.58□□□□□ -0.88
RFC1-213ENST00000512275 DLC1Q96QB1 1528 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 PTPRAP18433 802 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 HSPA2P54652 639 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 COL9A2Q14055 689 aaPredicted RBP9.58□□□□□ -0.88
RFC1-213ENST00000512275 ZNF423Q2M1K9 1284 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 FAM196AQ6ZSG2 479 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 FCHSD1Q86WN1 690 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 ANKLE2Q86XL3 938 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 TRIM42Q8IWZ5 723 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 FAM177A1Q8N128 213 aaPredicted RBP9.58□□□□□ -0.88
RFC1-213ENST00000512275 GOLM1Q8NBJ4 401 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 POLR3GLQ9BT43 218 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 SMG9Q9H0W8 520 aaKnown RBP9.58□□□□□ -0.88
RFC1-213ENST00000512275 UBP1Q9NZI7 540 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 LRPPRCP42704 1394 aaKnown RBP9.58□□□□□ -0.88
RFC1-213ENST00000512275 CCDC7Q96M83 1385 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 DISP3Q9P2K9 1392 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 MYOM1P52179 1685 aa9.58□□□□□ -0.88
RFC1-213ENST00000512275 WASHC2AQ641Q2 1341 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 CENPJQ9HC77 1338 aaPredicted RBP9.57□□□□□ -0.88
RFC1-213ENST00000512275 BMP6P22004 513 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 CRKP46108 304 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 NASPP49321 788 aaPredicted RBP9.57□□□□□ -0.88
RFC1-213ENST00000512275 SNAP47Q5SQN1 464 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 CCDC84Q86UT8 332 aaPredicted RBP9.57□□□□□ -0.88
RFC1-213ENST00000512275 TTC9Q92623 222 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 DCAF5Q96JK2 942 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 LRRC3Q9BY71 257 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 TRIM33Q9UPN9 1127 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 EFR3BQ9Y2G0 817 aa9.57□□□□□ -0.88
RFC1-213ENST00000512275 KIF7Q2M1P5 1343 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 PTPRUQ92729 1446 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 STK10O94804 968 aaKnown RBP9.56□□□□□ -0.88
RFC1-213ENST00000512275 PPP2R3AQ06190 1150 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 SAFB2Q14151 953 aaKnown RBP eCLIP9.56□□□□□ -0.88
RFC1-213ENST00000512275 SOGA3Q5TF21 947 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 ELMSAN1Q6PJG2 1045 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 TESK2Q96S53 571 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 STRIP2Q9ULQ0 834 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 TULP4Q9NRJ4 1543 aa9.56□□□□□ -0.88
RFC1-213ENST00000512275 PLEKHH1Q9ULM0 1364 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 ESRRAP11474 423 aaPredicted RBP9.55□□□□□ -0.88
RFC1-213ENST00000512275 NME2P22392 152 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 ZNF157P51786 506 aaPredicted RBP9.55□□□□□ -0.88
RFC1-213ENST00000512275 DDX10Q13206 875 aaKnown RBP9.55□□□□□ -0.88
RFC1-213ENST00000512275 CCDC144BQ3MJ40 725 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 GIMAP6Q6P9H5 292 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 C1orf229Q6ZS94 237 aaPredicted RBP9.55□□□□□ -0.88
RFC1-213ENST00000512275 SLITRK4Q8IW52 837 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 STK35Q8TDR2 534 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 TECPR2O15040 1411 aa9.55□□□□□ -0.88
RFC1-213ENST00000512275 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.54□□□□□ -0.88
RFC1-213ENST00000512275 ROBO2Q9HCK4 1378 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 ELOA3CA0A087WX78 387 aaPredicted RBP9.54□□□□□ -0.88
RFC1-213ENST00000512275 ELOA3DA6NLF2 546 aaPredicted RBP9.54□□□□□ -0.88
RFC1-213ENST00000512275 SHISA8B8ZZ34 492 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 SMARCA5O60264 1052 aaPredicted RBP9.54□□□□□ -0.88
RFC1-213ENST00000512275 APOBRQ0VD83 1088 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 PLA2G4EQ3MJ16 856 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 ELOA3BQ3SY89 546 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 DIEXFQ68CQ4 756 aaKnown RBP9.54□□□□□ -0.88
RFC1-213ENST00000512275 NOP9Q86U38 636 aaKnown RBP9.54□□□□□ -0.88
RFC1-213ENST00000512275 MICALL1Q8N3F8 863 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 GALNT6Q8NCL4 622 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 ELOA3Q8NG57 546 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 PRAM1Q96QH2 718 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 ZNF408Q9H9D4 720 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 SAMM50Q9Y512 469 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 PCDHB5Q9Y5E4 795 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 STRCP1A6NGW2 1772 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 NWD1Q149M9 1564 aa9.54□□□□□ -0.88
RFC1-213ENST00000512275 NALCNQ8IZF0 1738 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 ABCC11Q96J66 1382 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 SBNO2Q9Y2G9 1366 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 FAM221AA4D161 298 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 NEURL1BA8MQ27 555 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 F13A1P00488 732 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 ITGB2P05107 769 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 SNRPNP63162 240 aaKnown RBP9.53□□□□□ -0.88
RFC1-213ENST00000512275 TMF1P82094 1093 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 PSAPL1Q6NUJ1 521 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 BNC2Q6ZN30 1099 aaPredicted RBP9.53□□□□□ -0.88
RFC1-213ENST00000512275 SULF2Q8IWU5 870 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 GATAD2BQ8WXI9 593 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 GAL3ST3Q96A11 431 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 LACRTQ9GZZ8 138 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 POGKQ9P215 609 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 GDF2Q9UK05 429 aaPredicted RBP9.53□□□□□ -0.88
RFC1-213ENST00000512275 CYP8B1Q9UNU6 501 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 TBX22Q9Y458 520 aa9.53□□□□□ -0.88
RFC1-213ENST00000512275 SSBP05455 408 aaKnown RBP eCLIP9.52□□□□□ -0.89
RFC1-213ENST00000512275 EPHA1P21709 976 aa9.52□□□□□ -0.89
RFC1-213ENST00000512275 ZNF252P-AS1Q0IIN9 211 aa9.52□□□□□ -0.89
RFC1-213ENST00000512275 GRIK5Q16478 980 aa9.52□□□□□ -0.89
RFC1-213ENST00000512275 NBPF6Q5VWK0 638 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms