RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NEDD4P46934 1319 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 DHX16O60231 1041 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 SLC3A2P08195 630 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 TTLL12Q14166 644 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 TMEM67Q5HYA8 995 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 DPY19L2Q6NUT2 758 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 ZNF710Q8N1W2 664 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 IRS2Q9Y4H2 1338 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 GDF11O95390 407 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 CTR9Q6PD62 1173 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 CMTR1Q8N1G2 835 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 MYRIPQ8NFW9 859 aa10.08□□□□□ -0.8
LIMCH1-209ENST00000509277 FAM205AQ6ZU69 1335 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 FOXP2O15409 715 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 TSPY3P0CV98 308 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 TSPY8P0CW00 308 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 CDAN1Q8IWY9 1227 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 CSRNP1Q96S65 589 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 TMEM39BQ9GZU3 492 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 HLA-DOAP06340 250 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 PLCG2P16885 1265 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 KRT32Q14532 448 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 AKNAD1Q5T1N1 836 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 C15orf52Q6ZUT6 534 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 RUFY3Q7L099 469 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 CCDC84Q86UT8 332 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 NKX2-3Q8TAU0 364 aa10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 BAZ2BQ9UIF8 2168 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-209ENST00000509277 KLF18A0A0U1RQI7 1052 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 CPLX1O14810 134 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 LARGE1O95461 756 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 NUCB2P80303 420 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 TFAP4Q01664 338 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 PDE4BQ07343 736 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 GPT2Q8TD30 523 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 MYOZ2Q9NPC6 264 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 ST7Q9NRC1 585 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 FLT1P17948 1338 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 LRP5O75197 1615 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 hCG_1642624A0A1W2PR95 340 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 CCDC69A6NI79 296 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 GOLGA8BA8MQT2 603 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 MCM5P33992 734 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 IRX5P78411 483 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 APOBEC3HQ6NTF7 200 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 SENP2Q9HC62 589 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 ECM2O94769 699 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 GUCY1B3Q02153 619 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 GRM1Q13255 1194 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 KIF4BQ2VIQ3 1234 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 SYNE3Q6ZMZ3 975 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 CYB5R4Q7L1T6 521 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 TMX3Q96JJ7 454 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 TRMT1Q9NXH9 659 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 ZSWIM5Q9P217 1185 aa10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-209ENST00000509277 BAZ2AQ9UIF9 1905 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 GPR75-ASB3A0A0A6YYF3 556 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 CCDC66A2RUB6 948 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 ZNF500O60304 480 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 IBSPP21815 317 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 RPS6KB1P23443 525 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 IKQ13123 557 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 SART3Q15020 963 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 SHROOM1Q2M3G4 852 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 ANGEL2Q5VTE6 544 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 DHX32Q7L7V1 743 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 GTF3C6Q969F1 213 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 SCN9AQ15858 1988 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 VPS37CA5D8V6 355 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 DDTLA6NHG4 134 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 CAMK4Q16566 473 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 TPD52L1Q16890 204 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 TRPM4Q8TD43 1214 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 ESR2Q92731 530 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 TIGD1Q96MW7 591 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 ATP8A2Q9NTI2 1148 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 MYH2Q9UKX2 1941 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 TULP1O00294 542 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 WNT10BO00744 389 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 VIL1P09327 827 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 RHBDL3P58872 404 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 GIMAP6Q6P9H5 292 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 IQCA1Q86XH1 822 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 RNF41Q9H4P4 317 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 VAT1LQ9HCJ6 419 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 GGA3Q9NZ52 723 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 DUOX1Q9NRD9 1551 aa10.05□□□□□ -0.8
LIMCH1-209ENST00000509277 WTAPQ15007 396 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 LRSAM1Q6UWE0 723 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 CCAR2Q8N163 923 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 LMBRD1Q9NUN5 540 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 ZNF70Q9UC06 446 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 WDHD1O75717 1129 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 RASA3Q14644 834 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 GRIPAP1Q4V328 841 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 TTC6Q86TZ1 520 aa10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 SYAP1Q96A49 352 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-209ENST00000509277 TPCN1Q9ULQ1 816 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms