RNA–Protein interactions for RNA: ENST00000498801.5

GARNL3-222, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-222	ENST00000498801	ZCCHC2	Q9C0B9	1178 aa	Known RBP	9.48	□□□□□ -0.89
GARNL3-222	ENST00000498801	NUCKS1	Q9H1E3	243 aa	Known RBP	9.48	□□□□□ -0.89
GARNL3-222	ENST00000498801	FNDC3A	Q9Y2H6	1198 aa	Known RBP	9.48	□□□□□ -0.89
GARNL3-222	ENST00000498801	KRT24	Q2M2I5	525 aa		9.47	□□□□□ -0.89
GARNL3-222	ENST00000498801	DUSP27	Q5VZP5	1158 aa		9.47	□□□□□ -0.89
GARNL3-222	ENST00000498801	PDE12	Q6L8Q7	609 aa	Known RBP	9.47	□□□□□ -0.89
GARNL3-222	ENST00000498801	USP16	Q9Y5T5	823 aa		9.47	□□□□□ -0.89
GARNL3-222	ENST00000498801		A0A087WZG4	1122 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	DCDC2B	A2VCK2	349 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	PRAMEF22	A3QJZ6	481 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801		H7C1W4	665 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	ATXN7	O15265	892 aa	Predicted RBP	9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	EFS	O43281	561 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	XYLB	O75191	536 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	PRPF40A	O75400	957 aa	Known RBP	9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	GYS1	P13807	737 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	ATP2B2	Q01814	1243 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	EXOSC9	Q06265	439 aa	Known RBP	9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	TRAPPC3L	Q5T215	181 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	XKR5	Q6UX68	686 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	ZNF438	Q7Z4V0	828 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	C8orf58	Q8NAV2	365 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	CSRNP1	Q96S65	589 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	SETDB2	Q96T68	719 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	CUEDC1	Q9NWM3	386 aa	Predicted RBP	9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	NARF	Q9UHQ1	456 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	WWC3	Q9ULE0	1092 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	PCDHGC4	Q9Y5F7	938 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	C10orf71	Q711Q0	1435 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	ATP10D	Q9P241	1426 aa		9.46	□□□□□ -0.9
GARNL3-222	ENST00000498801	BCOR	Q6W2J9	1755 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	MYH14	Q7Z406	1995 aa	Known RBP	9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	ELL2	O00472	640 aa	Predicted RBP	9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	EIF1AY	O14602	144 aa	Known RBP	9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	TNFRSF21	O75509	655 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	ZBTB7A	O95365	584 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	FGD1	P98174	961 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	DBN1	Q16643	649 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	TWISTNB	Q3B726	338 aa	Predicted RBP	9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	TRIM22	Q8IYM9	498 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	NLGN1	Q8N2Q7	840 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	TSPYL6	Q8N831	410 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	SNX29	Q8TEQ0	813 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	CHMP4A	Q9BY43	222 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	FOXD3	Q9UJU5	478 aa	Predicted RBP	9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	KCNH4	Q9UQ05	1017 aa		9.45	□□□□□ -0.9
GARNL3-222	ENST00000498801	KHNYN	O15037	678 aa	Known RBP	9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	EGFR	P00533	1210 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	A1BG	P04217	495 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	NEFL	P07196	543 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	SNRPB	P14678	240 aa	Known RBP	9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	RFC4	P35249	363 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	CLEC4G	Q6UXB4	293 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	ZNF837	Q96EG3	531 aa	Predicted RBP	9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	DUSP9	Q99956	384 aa	Known RBP	9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	CFHR5	Q9BXR6	569 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	DNAJC25	Q9H1X3	360 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	ELP3	Q9H9T3	547 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	C11orf16	Q9NQ32	467 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	TMEM63C	Q9P1W3	806 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	IBTK	Q9P2D0	1353 aa	Predicted RBP	9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	NRXN2	Q9P2S2	1712 aa		9.44	□□□□□ -0.9
GARNL3-222	ENST00000498801	ERVV-1	B6SEH8	477 aa		9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	CAMTA2	O94983	1202 aa		9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	ITGA6	P23229	1130 aa		9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	VAMP1	P23763	118 aa		9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	TNP2	Q05952	138 aa		9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	SFSWAP	Q12872	951 aa	Known RBP	9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	DDX21	Q9NR30	783 aa	Known RBP eCLIP	9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	NDFIP2	Q9NV92	336 aa		9.43	□□□□□ -0.9
GARNL3-222	ENST00000498801	RIC1	Q4ADV7	1423 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	CARMIL3	Q8ND23	1372 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	LCE2B	O14633	110 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	CPNE3	O75131	537 aa	Known RBP	9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	VAMP4	O75379	141 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	CT47B1	P0C2W7	299 aa	Predicted RBP	9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	MAPT	P10636	758 aa	Known RBP	9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	EIF2S2	P20042	333 aa	Known RBP	9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	CANX	P27824	592 aa	Known RBP	9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	POLD1	P28340	1107 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	TM4SF1	P30408	202 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	ALG1L	Q6GMV1	187 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	SMIM5	Q71RC9	77 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	BCL11A	Q9H165	835 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	RNF19A	Q9NV58	838 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	DBF4	Q9UBU7	674 aa	Predicted RBP	9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	PARP2	Q9UGN5	583 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	HCN2	Q9UL51	889 aa		9.42	□□□□□ -0.9
GARNL3-222	ENST00000498801	POLRMT	O00411	1230 aa	Known RBP	9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	BNIP3L	O60238	219 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	PHACTR2	O75167	634 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	LAMC2	Q13753	1193 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	CCDC30	Q5VVM6	783 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801		Q6ZNB5	142 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	FBF1	Q8TES7	1133 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	GMCL1	Q96IK5	515 aa		9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	ABI2	Q9NYB9	513 aa	Predicted RBP	9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	SRP68	Q9UHB9	627 aa	Known RBP	9.41	□□□□□ -0.9
GARNL3-222	ENST00000498801	MAP3K15	Q6ZN16	1313 aa		9.4	□□□□□ -0.9
GARNL3-222	ENST00000498801	TCERG1	O14776	1098 aa	Known RBP	9.4	□□□□□ -0.9

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