RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ELP3Q9H9T3 547 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 ZNF287Q9HBT7 754 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.12□□□□□ -0.15
CUX1-210ENST00000497815 TAF6LQ9Y6J9 622 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 TLL2Q9Y6L7 1015 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 SLC27A2O14975 620 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 CTNND1O60716 968 aaKnown RBP14.11□□□□□ -0.15
CUX1-210ENST00000497815 GH2P01242 217 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 RASA1P20936 1047 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 CAP2P40123 477 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 NECTIN1Q15223 517 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 ABCB5Q2M3G0 1257 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 AKNAD1Q5T1N1 836 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 LDLRAD1Q5T700 205 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 SCYL3Q8IZE3 742 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 ZNF444Q8N0Y2 327 aaPredicted RBP14.11□□□□□ -0.15
CUX1-210ENST00000497815 PICK1Q9NRD5 415 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 CREBZFQ9NS37 354 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 SNCAIPQ9Y6H5 919 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 NEDD4P46934 1319 aa14.11□□□□□ -0.15
CUX1-210ENST00000497815 RANBP6O60518 1105 aaKnown RBP14.1□□□□□ -0.15
CUX1-210ENST00000497815 AKR1B1P15121 316 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 GRM1Q13255 1194 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 FAM47AQ5JRC9 791 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 RNF20Q5VTR2 975 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 CCDC84Q86UT8 332 aaPredicted RBP14.1□□□□□ -0.15
CUX1-210ENST00000497815 STAG1Q8WVM7 1258 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 SLC10A4Q96EP9 437 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 USP26Q9BXU7 913 aa14.1□□□□□ -0.15
CUX1-210ENST00000497815 RNF41Q9H4P4 317 aaPredicted RBP14.1□□□□□ -0.15
CUX1-210ENST00000497815 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.1□□□□□ -0.153e-7■■■□□ 17.9
CUX1-210ENST00000497815 OTOFQ9HC10 1997 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 LAMA4Q16363 1823 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 E7EWF7 191 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 EIF5BO60841 1220 aaKnown RBP14.09□□□□□ -0.15
CUX1-210ENST00000497815 ZNF157P51786 506 aaPredicted RBP14.09□□□□□ -0.15
CUX1-210ENST00000497815 TFAP4Q01664 338 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 MKRN3Q13064 507 aaKnown RBP14.09□□□□□ -0.15
CUX1-210ENST00000497815 RAB3GAP1Q15042 981 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 NOL9Q5SY16 702 aaKnown RBP14.09□□□□□ -0.15
CUX1-210ENST00000497815 RGMBQ6NW40 437 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 STOX1Q6ZVD7 989 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 OTUD5Q96G74 571 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 CABP5Q9NP86 173 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 TAOK2Q9UL54 1235 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 ZBTB21Q9ULJ3 1066 aa14.09□□□□□ -0.15
CUX1-210ENST00000497815 TSPY2A6NKD2 308 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 B4E1Z4 1266 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 ORC4O43929 436 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 ASNSP08243 561 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 TSPY3P0CV98 308 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 TSPY8P0CW00 308 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 HSPA6P17066 643 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 PTPRAP18433 802 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 MCCP23508 829 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 HSPA4P34932 840 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 SEPT2Q15019 361 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 CLEC10AQ8IUN9 316 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 RASEFQ8IZ41 740 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 NKX2-3Q8TAU0 364 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 OPTNQ96CV9 577 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 CCDC17Q96LX7 622 aa14.08□□□□□ -0.16
CUX1-210ENST00000497815 KDM4AO75164 1064 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 FGRP09769 529 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 PCP11498 1178 aaKnown RBP14.07□□□□□ -0.16
CUX1-210ENST00000497815 ZKSCAN1P17029 563 aaPredicted RBP14.07□□□□□ -0.16
CUX1-210ENST00000497815 TRDNQ13061 729 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 DEFB115Q30KQ5 88 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 TMEM179Q6ZVK1 233 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 RALYLQ86SE5 291 aaKnown RBP14.07□□□□□ -0.16
CUX1-210ENST00000497815 ESR2Q92731 530 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 CNNM2Q9H8M5 875 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 ZHX2Q9Y6X8 837 aa14.07□□□□□ -0.16
CUX1-210ENST00000497815 DOCK1Q14185 1865 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 SPDYE5A6NIY4 337 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 UNCXA6NJT0 531 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 USP17L5A8MUK1 530 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 GUCY1A2P33402 732 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 ATP2B2Q01814 1243 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 CYP4F22Q6NT55 531 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 ERO1BQ86YB8 467 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 RASAL3Q86YV0 1011 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 NCOA7Q8NI08 942 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 WNK4Q96J92 1243 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 ZKSCAN3Q9BRR0 538 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.06□□□□□ -0.16
CUX1-210ENST00000497815 KRT23Q9C075 422 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 SNX14Q9Y5W7 946 aa14.06□□□□□ -0.16
CUX1-210ENST00000497815 TRIM75PA6NK02 468 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 RASSF10A6NK89 507 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 EPB41L2O43491 1005 aaKnown RBP14.05□□□□□ -0.16
CUX1-210ENST00000497815 NMT2O60551 498 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 GJA5P36382 358 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 ICA1Q05084 483 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 ADCK5Q3MIX3 580 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 NEDD1Q8NHV4 660 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 HHIPL1Q96JK4 782 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 BACH2Q9BYV9 841 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 GINM1Q9NU53 330 aa14.05□□□□□ -0.16
CUX1-210ENST00000497815 MYH8P13535 1937 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms