RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 LDLRAD1Q5T700 205 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 CREB3L3Q68CJ9 461 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.25■□□□□ 0.35
BRCA1-223ENST00000494123 SCYL3Q8IZE3 742 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 STAG1Q8WVM7 1258 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 NBPF3Q9H094 633 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 CABP5Q9NP86 173 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 SLC27A2O14975 620 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 ZKSCAN1P17029 563 aaPredicted RBP17.25■□□□□ 0.35
BRCA1-223ENST00000494123 RRP1BQ14684 758 aaKnown RBP17.25■□□□□ 0.35
BRCA1-223ENST00000494123 CLMNQ96JQ2 1002 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 CCDC17Q96LX7 622 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 ELP3Q9H9T3 547 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 INCENPQ9NQS7 918 aa17.25■□□□□ 0.35
BRCA1-223ENST00000494123 ORC4O43929 436 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 RANBP6O60518 1105 aaKnown RBP17.24■□□□□ 0.35
BRCA1-223ENST00000494123 ASNSP08243 561 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 RASA1P20936 1047 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 TRDNQ13061 729 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 NOL9Q5SY16 702 aaKnown RBP17.24■□□□□ 0.35
BRCA1-223ENST00000494123 PAXIP1Q6ZW49 1069 aaPredicted RBP17.24■□□□□ 0.35
BRCA1-223ENST00000494123 SLC10A4Q96EP9 437 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 USP26Q9BXU7 913 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 CNNM2Q9H8M5 875 aa17.24■□□□□ 0.35
BRCA1-223ENST00000494123 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.24■□□□□ 0.35
BRCA1-223ENST00000494123 SEC24BO95487 1268 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 GH2P01242 217 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 TSPY3P0CV98 308 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 TSPY8P0CW00 308 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 AKR1B1P15121 316 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 KRT23Q9C075 422 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 GINM1Q9NU53 330 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 ZBTB21Q9ULJ3 1066 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 SNCAIPQ9Y6H5 919 aa17.23■□□□□ 0.35
BRCA1-223ENST00000494123 TSPY2A6NKD2 308 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 E7EWF7 191 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 FGRP09769 529 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 HSPA6P17066 643 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 HSPA4P34932 840 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 ZNF157P51786 506 aaPredicted RBP17.22■□□□□ 0.35
BRCA1-223ENST00000494123 RAB3GAP1Q15042 981 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 RGMBQ6NW40 437 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 RALYLQ86SE5 291 aaKnown RBP17.22■□□□□ 0.35
BRCA1-223ENST00000494123 ESR2Q92731 530 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 TACC3Q9Y6A5 838 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 NEDD4P46934 1319 aa17.22■□□□□ 0.35
BRCA1-223ENST00000494123 TFAP4Q01664 338 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 SHROOM1Q2M3G4 852 aaPredicted RBP17.21■□□□□ 0.35
BRCA1-223ENST00000494123 FAM47AQ5JRC9 791 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 TMEM179Q6ZVK1 233 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 UPF2Q9HAU5 1272 aaKnown RBP17.21■□□□□ 0.35
BRCA1-223ENST00000494123 USP17L5A8MUK1 530 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 NT5C2P49902 561 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 DEFB115Q30KQ5 88 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 ERO1BQ86YB8 467 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 NCOA7Q8NI08 942 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 OTUD5Q96G74 571 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 HHIPL1Q96JK4 782 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.21■□□□□ 0.35
BRCA1-223ENST00000494123 TAF6LQ9Y6J9 622 aa17.21■□□□□ 0.35
BRCA1-223ENST00000494123 SPDYE5A6NIY4 337 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 B4E1Z4 1266 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 KDM4AO75164 1064 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 PTPRAP18433 802 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 JAG1P78504 1218 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 GRM1Q13255 1194 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 KRT32Q14532 448 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 SEPT2Q15019 361 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 OPTNQ96CV9 577 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 AS3MTQ9HBK9 375 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 ZHX2Q9Y6X8 837 aa17.2■□□□□ 0.34
BRCA1-223ENST00000494123 RASSF10A6NK89 507 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 HTRA3P83110 453 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 PPATQ06203 517 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 STOX1Q6ZVD7 989 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 CCDC84Q86UT8 332 aaPredicted RBP17.19■□□□□ 0.34
BRCA1-223ENST00000494123 RASEFQ8IZ41 740 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 NEDD1Q8NHV4 660 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 CCDC102AQ96A19 550 aa17.19■□□□□ 0.34
BRCA1-223ENST00000494123 ICA1Q05084 483 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 RASAL3Q86YV0 1011 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 CNKSR2Q8WXI2 1034 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 WNK4Q96J92 1243 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 BACH2Q9BYV9 841 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 TBC1D2Q9BYX2 928 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 KANSL2Q9H9L4 492 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 SNX14Q9Y5W7 946 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 GREB1LQ9C091 1923 aaPredicted RBP17.18■□□□□ 0.34
BRCA1-223ENST00000494123 PLIN4Q96Q06 1357 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 ZBTB48P10074 688 aaPredicted RBP17.18■□□□□ 0.34
BRCA1-223ENST00000494123 GUCY1A2P33402 732 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 ATP2B2Q01814 1243 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 MKRN3Q13064 507 aaKnown RBP17.18■□□□□ 0.34
BRCA1-223ENST00000494123 PPIL2Q13356 520 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 TSGA10IPQ3SY00 556 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 CYP4F22Q6NT55 531 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 IQCA1Q86XH1 822 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 KCNB2Q92953 911 aa17.18■□□□□ 0.34
BRCA1-223ENST00000494123 PHIPQ8WWQ0 1821 aa17.17■□□□□ 0.34
BRCA1-223ENST00000494123 SLC10A3P09131 477 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms