RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 SLFN12Q8IYM2 578 aa8.97□□□□□ -0.97
VPS50-212ENST00000476413 MRFAP1L1Q96HT8 127 aa8.97□□□□□ -0.97
VPS50-212ENST00000476413 TMEM87BQ96K49 555 aa8.97□□□□□ -0.97
VPS50-212ENST00000476413 ATXN3LQ9H3M9 355 aa8.97□□□□□ -0.97
VPS50-212ENST00000476413 TMA7Q9Y2S6 64 aaKnown RBP8.97□□□□□ -0.97
VPS50-212ENST00000476413 B2RBV5 119 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 PIK3R2O00459 728 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 ALX3O95076 343 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 GJB6O95452 261 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 COL8A1P27658 744 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 SLBPQ14493 270 aaKnown RBP eCLIP8.96□□□□□ -0.98
VPS50-212ENST00000476413 FXNQ16595 210 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 PRRT3Q5FWE3 981 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 ISL2Q96A47 359 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 FAM105AQ9NUU6 356 aa8.96□□□□□ -0.98
VPS50-212ENST00000476413 NOP53Q9NZM5 478 aaKnown RBP8.96□□□□□ -0.98
VPS50-212ENST00000476413 POLR2BP30876 1174 aaKnown RBP8.95□□□□□ -0.98
VPS50-212ENST00000476413 CAP2P40123 477 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 PREPP48147 710 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 SLC6A19Q695T7 634 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 ANKRD34AQ69YU3 496 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 MRM1Q6IN84 353 aaKnown RBP8.95□□□□□ -0.98
VPS50-212ENST00000476413 C6orf15Q6UXA7 325 aaPredicted RBP8.95□□□□□ -0.98
VPS50-212ENST00000476413 DYMQ7RTS9 669 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 HID1Q8IV36 788 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 C12orf50Q8NA57 414 aaPredicted RBP8.95□□□□□ -0.98
VPS50-212ENST00000476413 FAM13CQ8NE31 585 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 ZNF507Q8TCN5 953 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 LENG1Q96BZ8 264 aaPredicted RBP8.95□□□□□ -0.98
VPS50-212ENST00000476413 PICK1Q9NRD5 415 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 ADAMTS8Q9UP79 889 aa8.95□□□□□ -0.98
VPS50-212ENST00000476413 MRPL42Q9Y6G3 142 aaKnown RBP8.95□□□□□ -0.98
VPS50-212ENST00000476413 CCDC85CA6NKD9 419 aa8.94□□□□□ -0.98
VPS50-212ENST00000476413 SPATA31C1P0DKV0 1188 aa8.94□□□□□ -0.98
VPS50-212ENST00000476413 SDE2Q6IQ49 451 aa8.94□□□□□ -0.98
VPS50-212ENST00000476413 AKTIPQ9H8T0 292 aa8.94□□□□□ -0.98
VPS50-212ENST00000476413 PDPK1O15530 556 aa8.93□□□□□ -0.98
VPS50-212ENST00000476413 ASPAP45381 313 aa8.93□□□□□ -0.98
VPS50-212ENST00000476413 RASGRF1Q13972 1273 aa8.93□□□□□ -0.98
VPS50-212ENST00000476413 FDX2Q6P4F2 183 aa8.93□□□□□ -0.98
VPS50-212ENST00000476413 FAM178BQ8IXR5 827 aa8.93□□□□□ -0.98
VPS50-212ENST00000476413 BEND7Q8N7W2 519 aaPredicted RBP8.93□□□□□ -0.98
VPS50-212ENST00000476413 KLHL6Q8WZ60 621 aa8.93□□□□□ -0.98
VPS50-212ENST00000476413 RNPC3Q96LT9 517 aaKnown RBP8.93□□□□□ -0.98
VPS50-212ENST00000476413 DPH2Q9BQC3 489 aaPredicted RBP8.93□□□□□ -0.98
VPS50-212ENST00000476413 UBOX5O94941 541 aa8.92□□□□□ -0.98
VPS50-212ENST00000476413 RAG1P15918 1043 aa8.92□□□□□ -0.98
VPS50-212ENST00000476413 ACSS3Q9H6R3 686 aa8.92□□□□□ -0.98
VPS50-212ENST00000476413 SLC12A7Q9Y666 1083 aa8.92□□□□□ -0.98
VPS50-212ENST00000476413 FAM86C2PA6NEL3 165 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 RGS13O14921 159 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 CST3P01034 146 aaPredicted RBP8.91□□□□□ -0.98
VPS50-212ENST00000476413 NOS3P29474 1203 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 YARSP54577 528 aaKnown RBP8.91□□□□□ -0.98
VPS50-212ENST00000476413 PRAMEF13Q5VWM6 474 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 PODNQ7Z5L7 613 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 SMYD4Q8IYR2 804 aaPredicted RBP8.91□□□□□ -0.98
VPS50-212ENST00000476413 LILRB2Q8N423 598 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 KCT2Q8NC54 265 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 UBL7Q96S82 380 aaPredicted RBP8.91□□□□□ -0.98
VPS50-212ENST00000476413 DNAJC7Q99615 494 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 PHAXQ9H814 394 aaKnown RBP8.91□□□□□ -0.98
VPS50-212ENST00000476413 KANSL2Q9H9L4 492 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 PCDHB10Q9UN67 800 aa8.91□□□□□ -0.98
VPS50-212ENST00000476413 DDAH1O94760 285 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 CCNFP41002 786 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 EGFLAMQ63HQ2 1017 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 CDPF1Q6NVV7 123 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 VHLLQ6RSH7 139 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 TMEM192Q8IY95 271 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 FAM46AQ96IP4 442 aaKnown RBP8.9□□□□□ -0.98
VPS50-212ENST00000476413 KIF2CQ99661 725 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 PIDD1Q9HB75 910 aa8.9□□□□□ -0.98
VPS50-212ENST00000476413 ZNF214Q9UL59 606 aaPredicted RBP8.9□□□□□ -0.98
VPS50-212ENST00000476413 COL17A1Q9UMD9 1497 aaPredicted RBP8.89□□□□□ -0.99
VPS50-212ENST00000476413 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.89□□□□□ -0.99
VPS50-212ENST00000476413 CANXP27824 592 aaKnown RBP8.89□□□□□ -0.99
VPS50-212ENST00000476413 TCEAL1Q15170 157 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 ZNF662Q6ZS27 426 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 CDC37L1Q7L3B6 337 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 PPFIBP1Q86W92 1011 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 BAHD1Q8TBE0 780 aaPredicted RBP8.89□□□□□ -0.99
VPS50-212ENST00000476413 PPP1R13LQ8WUF5 828 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 CYB5D2Q8WUJ1 264 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 USP21Q9UK80 565 aa8.89□□□□□ -0.99
VPS50-212ENST00000476413 RNGTTO60942 597 aaKnown RBP8.88□□□□□ -0.99
VPS50-212ENST00000476413 ADGRE1Q14246 886 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 MBTPS1Q14703 1052 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 ARMCX6Q7L4S7 300 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 PHACTR4Q8IZ21 702 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 WFDC12Q8WWY7 111 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 CCDC74BQ96LY2 380 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 PSMG3-AS1Q96PY0 264 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 FOXQ1Q9C009 403 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 SEMA6CQ9H3T2 930 aa8.88□□□□□ -0.99
VPS50-212ENST00000476413 KRBA1A5PL33 1030 aa8.87□□□□□ -0.99
VPS50-212ENST00000476413 ENPP3O14638 875 aa8.87□□□□□ -0.99
VPS50-212ENST00000476413 IREB2P48200 963 aaKnown RBP8.87□□□□□ -0.99
VPS50-212ENST00000476413 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.87□□□□□ -0.99
VPS50-212ENST00000476413 SPATC1Q76KD6 591 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms