RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 PXYLP1Q8TE99 480 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 GCC1Q96CN9 775 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 ASCC2Q9H1I8 757 aaPredicted RBP17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 EHD4Q9H223 541 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 SAP30BPQ9UHR5 308 aaKnown RBP17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 GABRQQ9UN88 632 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 NDUFB9Q9Y6M9 179 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 CEP290O15078 2479 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 GJB1P08034 283 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 HOXA7P31268 230 aaPredicted RBP17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 USP5P45974 858 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 FLT3LGP49771 235 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 JAG1P78504 1218 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 COA7Q96BR5 231 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 TMOD4Q9NZQ9 345 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 BIN2Q9UBW5 565 aaPredicted RBP17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 ZBTB21Q9ULJ3 1066 aa17.46■□□□□ 0.39
SNRNP40-203ENST00000463988 USP17L10C9JJH3 530 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 ADCY3O60266 1144 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 IFIT2P09913 472 aaKnown RBP17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 CCL5P13501 91 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 MTMR2Q13614 643 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 PDE3AQ14432 1141 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 TATDN1Q6P1N9 297 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 TTC6Q86TZ1 520 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 RIOK1Q9BRS2 568 aaKnown RBP17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 SERPINB13Q9UIV8 391 aa17.45■□□□□ 0.38
SNRNP40-203ENST00000463988 GDF11O95390 407 aa17.44■□□□□ 0.38
SNRNP40-203ENST00000463988 CAPN2P17655 700 aa17.44■□□□□ 0.38
SNRNP40-203ENST00000463988 GJA8P48165 433 aa17.44■□□□□ 0.38
SNRNP40-203ENST00000463988 SLC9C2Q5TAH2 1124 aa17.44■□□□□ 0.38
SNRNP40-203ENST00000463988 MORF4L1Q9UBU8 362 aa17.44■□□□□ 0.38
SNRNP40-203ENST00000463988 MYH1P12882 1939 aa17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 MAGEB6P1A0A0J9YX57 407 aa17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 APBB1O00213 710 aa17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 PDE6AP16499 860 aa17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 IRX3P78415 501 aaPredicted RBP17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 SHISA4Q96DD7 197 aa17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 RNF208Q9H0X6 261 aa17.43■□□□□ 0.38
SNRNP40-203ENST00000463988 GH2P01242 217 aa17.42■□□□□ 0.38
SNRNP40-203ENST00000463988 SHROOM1Q2M3G4 852 aaPredicted RBP17.42■□□□□ 0.38
SNRNP40-203ENST00000463988 CRNKL1Q9BZJ0 848 aaKnown RBP17.42■□□□□ 0.38
SNRNP40-203ENST00000463988 DOCK3Q8IZD9 2030 aa17.42■□□□□ 0.38
SNRNP40-203ENST00000463988 GOLIM4O00461 696 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 ATP5JP18859 108 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 USP17L2Q6R6M4 530 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 UBE2Q1Q7Z7E8 422 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 GTF3C2Q8WUA4 911 aaPredicted RBP17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 DNAJC2Q99543 621 aaKnown RBP17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 P2RX7Q99572 595 aaKnown RBP17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 UNC93B1Q9H1C4 597 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 TAOK2Q9UL54 1235 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 ZNF532Q9HCE3 1301 aa17.41■□□□□ 0.38
SNRNP40-203ENST00000463988 TCRBV5S4A2TA0A5A2 114 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 INHAP05111 366 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 ELNP15502 786 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 HERVK_113P62684 666 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 CERKLQ49MI3 558 aaPredicted RBP17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 GPRC5AQ8NFJ5 357 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 U2AF1L4Q8WU68 220 aaKnown RBP17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 C12orf42Q96LP6 360 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 EMILIN3Q9NT22 766 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 GJD2Q9UKL4 321 aa17.4■□□□□ 0.38
SNRNP40-203ENST00000463988 SGPL1O95470 568 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 POLR3DP05423 398 aaPredicted RBP17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 SHMT1P34896 483 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 PLCD1P51178 756 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 USP14P54578 494 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 GABPAQ06546 454 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 ABCB5Q2M3G0 1257 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 CABP5Q9NP86 173 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 PAG1Q9NWQ8 432 aa17.39■□□□□ 0.37
SNRNP40-203ENST00000463988 C20orf194Q5TEA3 1177 aa17.38■□□□□ 0.37
SNRNP40-203ENST00000463988 HAUS7Q99871 368 aa17.38■□□□□ 0.37
SNRNP40-203ENST00000463988 LRRCC1Q9C099 1032 aa17.38■□□□□ 0.37
SNRNP40-203ENST00000463988 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.38■□□□□ 0.37
SNRNP40-203ENST00000463988 KIAA1683Q9H0B3 1180 aa17.38■□□□□ 0.37
SNRNP40-203ENST00000463988 PAK6Q9NQU5 681 aaPredicted RBP17.38■□□□□ 0.37
SNRNP40-203ENST00000463988 HMGCRP04035 888 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 RAB3GAP1Q15042 981 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 HABP4Q5JVS0 413 aaKnown RBP17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 FEZ1Q99689 392 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 BOLA2Q9H3K6 86 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 TXNRD2Q9NNW7 524 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 DCP1AQ9NPI6 582 aaPredicted RBP17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 MCM9Q9NXL9 1143 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 RBPJLQ9UBG7 517 aa17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 DDX60LQ5H9U9 1706 aaKnown RBP17.37■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L15C9J2P7 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L13C9JLJ4 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L11C9JVI0 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L18D6R9N7 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L22D6RA61 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L17D6RBQ6 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L19D6RCP7 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L20D6RJB6 530 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 XRCC5P13010 732 aaKnown RBP17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 MAPK4P31152 587 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 ADD2P35612 726 aa17.36■□□□□ 0.37
SNRNP40-203ENST00000463988 USP17L24Q0WX57 530 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 434.5 ms