RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 USP17L21D6R901 530 aa12.75□□□□□ -0.37
UBR4-208ENST00000459947 ABCB5Q2M3G0 1257 aa12.75□□□□□ -0.37
UBR4-208ENST00000459947 GTF3C2Q8WUA4 911 aaPredicted RBP12.75□□□□□ -0.37
UBR4-208ENST00000459947 PTPRAP18433 802 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 ARHGEF6Q15052 776 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 ANKRD23Q86SG2 305 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 PROCA1Q8NCQ7 364 aaPredicted RBP12.74□□□□□ -0.37
UBR4-208ENST00000459947 OTUD5Q96G74 571 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 CLMNQ96JQ2 1002 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 ANAPC4Q9UJX5 808 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 ZBTB21Q9ULJ3 1066 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 MYH8P13535 1937 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 CTR9Q6PD62 1173 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 CCDC178Q5BJE1 867 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 PNMA3Q9UL41 463 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 SRCAPQ6ZRS2 3230 aa12.74□□□□□ -0.37
UBR4-208ENST00000459947 CCL15-CCL14A0A0B4J2E2 113 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 AOC2O75106 756 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 CCL15Q16663 113 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 ZNF280CQ8ND82 737 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 TMOD4Q9NZQ9 345 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 PRKAB2O43741 272 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 KIAA1211Q6ZU35 1233 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 ZKSCAN4Q969J2 545 aaPredicted RBP12.73□□□□□ -0.37
UBR4-208ENST00000459947 ARHGEF10LQ9HCE6 1279 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 GSPT1P15170 499 aaKnown RBP12.73□□□□□ -0.37
UBR4-208ENST00000459947 SH3D19Q5HYK7 790 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 USP17L2Q6R6M4 530 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 MKNK2Q9HBH9 465 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 PRDM10Q9NQV6 1147 aa12.73□□□□□ -0.37
UBR4-208ENST00000459947 A0A0D9SFI3 127 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 CDC45O75419 566 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 HSPA1AP0DMV8 641 aaKnown RBP12.72□□□□□ -0.37
UBR4-208ENST00000459947 HSPA1BP0DMV9 641 aaKnown RBP12.72□□□□□ -0.37
UBR4-208ENST00000459947 SHMT1P34896 483 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 ZHX2Q9Y6X8 837 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 CDK8P49336 464 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 IFNL1Q8IU54 200 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 ZNF444Q8N0Y2 327 aaPredicted RBP12.72□□□□□ -0.37
UBR4-208ENST00000459947 ZFYVE28Q9HCC9 887 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 AFG3L2Q9Y4W6 797 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 U3KPZ7 1027 aaPredicted RBP12.72□□□□□ -0.37
UBR4-208ENST00000459947 A0A0G2JLL6 359 aaPredicted RBP12.72□□□□□ -0.37
UBR4-208ENST00000459947 CHMLP26374 656 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 PPARAQ07869 468 aa12.72□□□□□ -0.37
UBR4-208ENST00000459947 PRRT2Q7Z6L0 340 aaPredicted RBP12.72□□□□□ -0.37
UBR4-208ENST00000459947 PARK7Q99497 189 aaKnown RBP12.71□□□□□ -0.37
UBR4-208ENST00000459947 KANSL2Q9H9L4 492 aa12.71□□□□□ -0.37
UBR4-208ENST00000459947 PLIN4Q96Q06 1357 aa12.71□□□□□ -0.37
UBR4-208ENST00000459947 MINDY4BA8MYZ0 360 aa12.71□□□□□ -0.37
UBR4-208ENST00000459947 CWC27Q6UX04 472 aaKnown RBP12.71□□□□□ -0.37
UBR4-208ENST00000459947 FAM227BQ96M60 508 aa12.71□□□□□ -0.37
UBR4-208ENST00000459947 DNAJC18Q9H819 358 aa12.71□□□□□ -0.37
UBR4-208ENST00000459947 EPB41L4AQ9HCS5 686 aaPredicted RBP12.71□□□□□ -0.37
UBR4-208ENST00000459947 BAZ2AQ9UIF9 1905 aaKnown RBP12.71□□□□□ -0.37
UBR4-208ENST00000459947 ORC4O43929 436 aa12.71□□□□□ -0.38
UBR4-208ENST00000459947 HSPD1P10809 573 aaKnown RBP12.71□□□□□ -0.38
UBR4-208ENST00000459947 PLCD1P51178 756 aa12.71□□□□□ -0.38
UBR4-208ENST00000459947 IMMTQ16891 758 aaKnown RBP12.71□□□□□ -0.38
UBR4-208ENST00000459947 C12orf42Q96LP6 360 aa12.71□□□□□ -0.38
UBR4-208ENST00000459947 USP17L10C9JJH3 530 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 EPB41L2O43491 1005 aaKnown RBP12.7□□□□□ -0.38
UBR4-208ENST00000459947 OSBPP22059 807 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 GJA5P36382 358 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 MS4A4AQ96JQ5 239 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 SEC62Q99442 399 aaKnown RBP12.7□□□□□ -0.38
UBR4-208ENST00000459947 FEZ1Q99689 392 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 LOC285556D6RIA3 1793 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 LAMA4Q16363 1823 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 KIAA1683Q9H0B3 1180 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 CNNM2Q9H8M5 875 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 RNF186Q9NXI6 227 aa12.7□□□□□ -0.38
UBR4-208ENST00000459947 MPHOSPH10O00566 681 aaKnown RBP12.69□□□□□ -0.38
UBR4-208ENST00000459947 IRF6O14896 467 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 GH2P01242 217 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 LPAR1Q92633 364 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 AGTPBP1Q9UPW5 1226 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 SGSM2O43147 1006 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 BACE1P56817 501 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 FZD1Q9UP38 647 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 PHIPQ8WWQ0 1821 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 CYP2D6P10635 497 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 BRI3BPQ8WY22 251 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 NYAP2Q9P242 653 aa12.69□□□□□ -0.38
UBR4-208ENST00000459947 ZNF213O14771 459 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 TAF1CQ15572 869 aaPredicted RBP12.68□□□□□ -0.38
UBR4-208ENST00000459947 SLFNL1Q499Z3 407 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 FAM196BA6NMK8 535 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 GDF11O95390 407 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 FGRP09769 529 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 ICA1Q05084 483 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 KRT23Q9C075 422 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 GOPCQ9HD26 462 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 GCLCP48506 637 aaPredicted RBP12.68□□□□□ -0.38
UBR4-208ENST00000459947 GADL1Q6ZQY3 521 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 CCDC129Q6ZRS4 1044 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 NEDD1Q8NHV4 660 aa12.68□□□□□ -0.38
UBR4-208ENST00000459947 FGAP02671 866 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 HSPA8P11142 646 aaKnown RBP12.67□□□□□ -0.38
UBR4-208ENST00000459947 SPP2Q13103 211 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms