RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CLCN7P51798 805 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 ALG1LQ6GMV1 187 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 CYFIP1Q7L576 1253 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 ZSCAN29Q8IWY8 852 aaPredicted RBP6.94□□□□□ -1.3
VPS29-202ENST00000447578 ASB16Q96NS5 453 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 MIPEPQ99797 713 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 FOXQ1Q9C009 403 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 C12orf49Q9H741 205 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 CARS2Q9HA77 564 aaKnown RBP6.94□□□□□ -1.3
VPS29-202ENST00000447578 TPX2Q9ULW0 747 aaKnown RBP6.94□□□□□ -1.3
VPS29-202ENST00000447578 MAPK8IP1Q9UQF2 711 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 JAG2Q9Y219 1238 aa6.94□□□□□ -1.3
VPS29-202ENST00000447578 FAM155AB1AL88 458 aaPredicted RBP6.93□□□□□ -1.3
VPS29-202ENST00000447578 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.93□□□□□ -1.3
VPS29-202ENST00000447578 GIPC1O14908 333 aa6.93□□□□□ -1.3
VPS29-202ENST00000447578 FGD1P98174 961 aa6.93□□□□□ -1.3
VPS29-202ENST00000447578 ANKRD24Q8TF21 1146 aa6.93□□□□□ -1.3
VPS29-202ENST00000447578 GAL3ST3Q96A11 431 aa6.93□□□□□ -1.3
VPS29-202ENST00000447578 SLC38A3Q99624 504 aa6.93□□□□□ -1.3
VPS29-202ENST00000447578 SEMA3GQ9NS98 782 aa6.93□□□□□ -1.3
VPS29-202ENST00000447578 PATL2C9JE40 543 aaKnown RBP6.92□□□□□ -1.3
VPS29-202ENST00000447578 H3BS24 57 aa6.92□□□□□ -1.3
VPS29-202ENST00000447578 FAM84AQ96KN4 292 aa6.92□□□□□ -1.3
VPS29-202ENST00000447578 WNT10AQ9GZT5 417 aa6.92□□□□□ -1.3
VPS29-202ENST00000447578 FAM8A1Q9UBU6 413 aa6.92□□□□□ -1.3
VPS29-202ENST00000447578 SPG7Q9UQ90 795 aa6.92□□□□□ -1.3
VPS29-202ENST00000447578 IVNS1ABPQ9Y6Y0 642 aa6.92□□□□□ -1.3
VPS29-202ENST00000447578 P4HBP07237 508 aaKnown RBP6.91□□□□□ -1.3
VPS29-202ENST00000447578 ETF1P62495 437 aaKnown RBP6.91□□□□□ -1.3
VPS29-202ENST00000447578 ATP2B2Q01814 1243 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 WIPI1Q5MNZ9 446 aaPredicted RBP6.91□□□□□ -1.3
VPS29-202ENST00000447578 SFRP5Q5T4F7 317 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 SCARA3Q6AZY7 606 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 HDXQ7Z353 690 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 XAGE3Q8WTP9 111 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 C19orf73Q9NVV2 129 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 LMCD1Q9NZU5 365 aa6.91□□□□□ -1.3
VPS29-202ENST00000447578 TTF2Q9UNY4 1162 aaKnown RBP6.91□□□□□ -1.3
VPS29-202ENST00000447578 CBX7O95931 251 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 AFMP43652 599 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 MFAP1P55081 439 aaKnown RBP6.9□□□□□ -1.3
VPS29-202ENST00000447578 TTBK2Q6IQ55 1244 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 PRR23BQ6ZRT6 265 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 MFSD4AQ8N468 514 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 PCDHB5Q9Y5E4 795 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 CAPN6Q9Y6Q1 641 aa6.9□□□□□ -1.3
VPS29-202ENST00000447578 LDHBP07195 334 aaKnown RBP6.89□□□□□ -1.31
VPS29-202ENST00000447578 GRK4P32298 578 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 PRAMEF13Q5VWM6 474 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 LETMD1Q6P1Q0 360 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 SV2BQ7L1I2 683 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 RGS22Q8NE09 1264 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 KIRREL1Q96J84 757 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 FAM53CQ9NYF3 392 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 ST14Q9Y5Y6 855 aa6.89□□□□□ -1.31
VPS29-202ENST00000447578 KCNA1Q09470 495 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 SEPT6Q14141 434 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 CDH24Q86UP0 819 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 CILP2Q8IUL8 1156 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 NPAS4Q8IUM7 802 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 HID1Q8IV36 788 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 MFSD2AQ8NA29 543 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 UBE2FQ969M7 185 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 TOX2Q96NM4 488 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 RNF19AQ9NV58 838 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 SNCAIPQ9Y6H5 919 aa6.88□□□□□ -1.31
VPS29-202ENST00000447578 GLI1P08151 1106 aa6.87□□□□□ -1.31
VPS29-202ENST00000447578 CAP2P40123 477 aa6.87□□□□□ -1.31
VPS29-202ENST00000447578 MPZL3Q6UWV2 235 aa6.87□□□□□ -1.31
VPS29-202ENST00000447578 C22orf34Q6ZV56 151 aa6.87□□□□□ -1.31
VPS29-202ENST00000447578 DPH2Q9BQC3 489 aaPredicted RBP6.87□□□□□ -1.31
VPS29-202ENST00000447578 ZSWIM5Q9P217 1185 aa6.87□□□□□ -1.31
VPS29-202ENST00000447578 RAPGEFL1Q9UHV5 662 aa6.87□□□□□ -1.31
VPS29-202ENST00000447578 GFRA2O00451 464 aa6.86□□□□□ -1.31
VPS29-202ENST00000447578 CST3P01034 146 aaPredicted RBP6.86□□□□□ -1.31
VPS29-202ENST00000447578 GDNFP39905 211 aa6.86□□□□□ -1.31
VPS29-202ENST00000447578 MAP3K11Q16584 847 aa6.86□□□□□ -1.31
VPS29-202ENST00000447578 TMEM67Q5HYA8 995 aa6.86□□□□□ -1.31
VPS29-202ENST00000447578 BHLHE22Q8NFJ8 381 aaPredicted RBP6.86□□□□□ -1.31
VPS29-202ENST00000447578 KCNK12Q9HB15 430 aa6.86□□□□□ -1.31
VPS29-202ENST00000447578 WASH4PA8MWX3 477 aa6.85□□□□□ -1.31
VPS29-202ENST00000447578 RAP1GAPP47736 663 aa6.85□□□□□ -1.31
VPS29-202ENST00000447578 TNK2Q07912 1038 aa6.85□□□□□ -1.31
VPS29-202ENST00000447578 CCDC85BQ15834 202 aaPredicted RBP6.85□□□□□ -1.31
VPS29-202ENST00000447578 SYDE1Q6ZW31 735 aaPredicted RBP6.85□□□□□ -1.31
VPS29-202ENST00000447578 ZSCAN18Q8TBC5 510 aaPredicted RBP6.85□□□□□ -1.31
VPS29-202ENST00000447578 DIRC2Q96SL1 478 aa6.85□□□□□ -1.31
VPS29-202ENST00000447578 EIF4BP23588 611 aaKnown RBP6.84□□□□□ -1.31
VPS29-202ENST00000447578 CFPP27918 469 aa6.84□□□□□ -1.31
VPS29-202ENST00000447578 GNA15P30679 374 aa6.84□□□□□ -1.31
VPS29-202ENST00000447578 SLAMF8Q9P0V8 285 aa6.84□□□□□ -1.31
VPS29-202ENST00000447578 TJP2Q9UDY2 1190 aa6.84□□□□□ -1.31
VPS29-202ENST00000447578 DNAJC25-GNG10A0A024R161 153 aa6.83□□□□□ -1.32
VPS29-202ENST00000447578 ERVFC1P60507 584 aa6.83□□□□□ -1.32
VPS29-202ENST00000447578 THAP5Q7Z6K1 395 aa6.83□□□□□ -1.32
VPS29-202ENST00000447578 SIAH1Q8IUQ4 282 aa6.83□□□□□ -1.32
VPS29-202ENST00000447578 ALPK1Q96QP1 1244 aa6.83□□□□□ -1.32
VPS29-202ENST00000447578 KRT1P04264 644 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 PGRP06401 933 aa6.82□□□□□ -1.32
VPS29-202ENST00000447578 LMNB1P20700 586 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms