RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PRO3102Q9H379 93 aa34.83■■■■□ 3.17
HMGB1-205ENST00000399494 MORF4L1Q9UBU8 362 aa34.83■■■■□ 3.17
HMGB1-205ENST00000399494 PALD1Q9ULE6 856 aa34.83■■■■□ 3.17
HMGB1-205ENST00000399494 NOP58Q9Y2X3 529 aaKnown RBP34.83■■■■□ 3.17
HMGB1-205ENST00000399494 MTMR2Q13614 643 aa34.82■■■■□ 3.16
HMGB1-205ENST00000399494 PIH1D3Q9NQM4 214 aaKnown RBP34.82■■■■□ 3.16
HMGB1-205ENST00000399494 HOXA7P31268 230 aaPredicted RBP34.81■■■■□ 3.16
HMGB1-205ENST00000399494 PDE3AQ14432 1141 aa34.81■■■■□ 3.16
HMGB1-205ENST00000399494 P2RX7Q99572 595 aaKnown RBP34.81■■■■□ 3.16
HMGB1-205ENST00000399494 XRN2Q9H0D6 950 aaKnown RBP eCLIP34.8■■■■□ 3.168e-6■□□□□ 10.8
HMGB1-205ENST00000399494 CHMP4BQ9H444 224 aaKnown RBP34.8■■■■□ 3.16
HMGB1-205ENST00000399494 C19orf81C9J6K1 198 aa34.79■■■■□ 3.16
HMGB1-205ENST00000399494 SHROOM1Q2M3G4 852 aaPredicted RBP34.79■■■■□ 3.16
HMGB1-205ENST00000399494 CRACR2BQ8N4Y2 399 aaPredicted RBP34.79■■■■□ 3.16
HMGB1-205ENST00000399494 GINM1Q9NU53 330 aa34.79■■■■□ 3.16
HMGB1-205ENST00000399494 TMOD4Q9NZQ9 345 aa34.79■■■■□ 3.16
HMGB1-205ENST00000399494 DBNLQ9UJU6 430 aaKnown RBP34.79■■■■□ 3.16
HMGB1-205ENST00000399494 MAST2Q6P0Q8 1798 aa34.78■■■■□ 3.16
HMGB1-205ENST00000399494 HMGCRP04035 888 aa34.78■■■■□ 3.16
HMGB1-205ENST00000399494 DYNLL1P63167 89 aaKnown RBP34.78■■■■□ 3.16
HMGB1-205ENST00000399494 C20orf194Q5TEA3 1177 aa34.78■■■■□ 3.16
HMGB1-205ENST00000399494 PAWRQ96IZ0 340 aaKnown RBP34.78■■■■□ 3.16
HMGB1-205ENST00000399494 EVI5O60447 810 aa34.77■■■■□ 3.16
HMGB1-205ENST00000399494 IRX3P78415 501 aaPredicted RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 EAF2Q96CJ1 260 aaPredicted RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 CCDC8Q9H0W5 538 aaPredicted RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 TLR7Q9NYK1 1049 aaKnown RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 SAP30BPQ9UHR5 308 aaKnown RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 CDK5RAP2Q96SN8 1893 aa34.77■■■■□ 3.16
HMGB1-205ENST00000399494 MYO5AQ9Y4I1 1855 aaKnown RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 RANBP2P49792 3224 aaKnown RBP34.77■■■■□ 3.16
HMGB1-205ENST00000399494 USP17L10C9JJH3 530 aa34.76■■■■□ 3.16
HMGB1-205ENST00000399494 GDF11O95390 407 aa34.76■■■■□ 3.16
HMGB1-205ENST00000399494 TRIM32Q13049 653 aa34.76■■■■□ 3.16
HMGB1-205ENST00000399494 TRIM34Q9BYJ4 488 aa34.76■■■■□ 3.16
HMGB1-205ENST00000399494 CYP7A1P22680 504 aa34.75■■■■□ 3.15
HMGB1-205ENST00000399494 TXNRD2Q9NNW7 524 aa34.75■■■■□ 3.15
HMGB1-205ENST00000399494 FOCADQ5VW36 1801 aa34.75■■■■□ 3.15
HMGB1-205ENST00000399494 RPTORQ8N122 1335 aa34.75■■■■□ 3.15
HMGB1-205ENST00000399494 PEX10O60683 326 aa34.74■■■■□ 3.15
HMGB1-205ENST00000399494 HERVK_113P62684 666 aa34.74■■■■□ 3.15
HMGB1-205ENST00000399494 ZBTB21Q9ULJ3 1066 aa34.74■■■■□ 3.15
HMGB1-205ENST00000399494 NECAB2Q7Z6G3 386 aa34.73■■■■□ 3.15
HMGB1-205ENST00000399494 GPRC5AQ8NFJ5 357 aa34.73■■■■□ 3.15
HMGB1-205ENST00000399494 DIS3LQ8TF46 1054 aaKnown RBP34.73■■■■□ 3.15
HMGB1-205ENST00000399494 HMX1Q9NP08 348 aaPredicted RBP34.73■■■■□ 3.15
HMGB1-205ENST00000399494 RBPJLQ9UBG7 517 aa34.73■■■■□ 3.15
HMGB1-205ENST00000399494 SZT2Q5T011 3432 aa34.73■■■■□ 3.15
HMGB1-205ENST00000399494 PLXNB2O15031 1838 aa34.72■■■■□ 3.15
HMGB1-205ENST00000399494 HLA-DOAP06340 250 aa34.72■■■■□ 3.15
HMGB1-205ENST00000399494 ANKLE1Q8NAG6 615 aa34.72■■■■□ 3.15
HMGB1-205ENST00000399494 EMILIN3Q9NT22 766 aa34.72■■■■□ 3.15
HMGB1-205ENST00000399494 RRP1P56182 461 aaKnown RBP34.71■■■■□ 3.15
HMGB1-205ENST00000399494 IDH1O75874 414 aaKnown RBP34.7■■■■□ 3.15
HMGB1-205ENST00000399494 CYP2B6P20813 491 aa34.7■■■■□ 3.15
HMGB1-205ENST00000399494 Q3C1V9 767 aa34.7■■■■□ 3.15
HMGB1-205ENST00000399494 CEP85Q6P2H3 762 aa34.7■■■■□ 3.15
HMGB1-205ENST00000399494 TRIB2Q92519 343 aa34.7■■■■□ 3.15
HMGB1-205ENST00000399494 POTEEQ6S8J3 1075 aa34.69■■■■□ 3.14
HMGB1-205ENST00000399494 MIGA1Q8NAN2 632 aa34.69■■■■□ 3.14
HMGB1-205ENST00000399494 ZBTB40Q9NUA8 1239 aa34.69■■■■□ 3.14
HMGB1-205ENST00000399494 TATDN1Q6P1N9 297 aa34.68■■■■□ 3.14
HMGB1-205ENST00000399494 NUDT12Q9BQG2 462 aa34.68■■■■□ 3.14
HMGB1-205ENST00000399494 NDUFB9Q9Y6M9 179 aa34.68■■■■□ 3.14
HMGB1-205ENST00000399494 GH2P01242 217 aa34.67■■■■□ 3.14
HMGB1-205ENST00000399494 XRCC5P13010 732 aaKnown RBP34.67■■■■□ 3.14
HMGB1-205ENST00000399494 MNX1P50219 401 aaPredicted RBP34.67■■■■□ 3.14
HMGB1-205ENST00000399494 MAP3K21Q5TCX8 1036 aa34.67■■■■□ 3.14
HMGB1-205ENST00000399494 USP17L2Q6R6M4 530 aa34.67■■■■□ 3.14
HMGB1-205ENST00000399494 CERS3Q8IU89 383 aa34.67■■■■□ 3.14
HMGB1-205ENST00000399494 MAGEB6Q8N7X4 407 aa34.67■■■■□ 3.14
HMGB1-205ENST00000399494 ANTXR1Q9H6X2 564 aa34.67■■■■□ 3.14
HMGB1-205ENST00000399494 MAPK4P31152 587 aa34.66■■■■□ 3.14
HMGB1-205ENST00000399494 ERVK-9P63128 1117 aa34.66■■■■□ 3.14
HMGB1-205ENST00000399494 ERVK-24P63145 666 aa34.66■■■■□ 3.14
HMGB1-205ENST00000399494 USP6NLQ92738 828 aa34.66■■■■□ 3.14
HMGB1-205ENST00000399494 STAP2Q9UGK3 403 aa34.66■■■■□ 3.14
HMGB1-205ENST00000399494 A0A1W2PPC1 479 aa34.65■■■■□ 3.14
HMGB1-205ENST00000399494 USP5P45974 858 aa34.65■■■■□ 3.14
HMGB1-205ENST00000399494 PORCNQ9H237 461 aa34.65■■■■□ 3.14
HMGB1-205ENST00000399494 OGDHLQ9ULD0 1010 aa34.65■■■■□ 3.14
HMGB1-205ENST00000399494 GTF3C2Q8WUA4 911 aaPredicted RBP34.64■■■■□ 3.14
HMGB1-205ENST00000399494 SOCS4Q8WXH5 440 aa34.64■■■■□ 3.14
HMGB1-205ENST00000399494 NBPF3Q9H094 633 aa34.64■■■■□ 3.14
HMGB1-205ENST00000399494 EHD4Q9H223 541 aa34.64■■■■□ 3.14
HMGB1-205ENST00000399494 ALPK3Q96L96 1907 aa34.63■■■■□ 3.13
HMGB1-205ENST00000399494 TMED8Q6PL24 325 aaPredicted RBP34.63■■■■□ 3.13
HMGB1-205ENST00000399494 RPAP2Q8IXW5 612 aaPredicted RBP34.63■■■■□ 3.13
HMGB1-205ENST00000399494 C12orf42Q96LP6 360 aa34.63■■■■□ 3.13
HMGB1-205ENST00000399494 SERPINB13Q9UIV8 391 aa34.63■■■■□ 3.13
HMGB1-205ENST00000399494 MYH1P12882 1939 aa34.62■■■■□ 3.13
HMGB1-205ENST00000399494 PRKAR2AP13861 404 aaKnown RBP34.62■■■■□ 3.13
HMGB1-205ENST00000399494 MAP3K12Q12852 859 aa34.62■■■■□ 3.13
HMGB1-205ENST00000399494 MORN1Q5T089 497 aa34.62■■■■□ 3.13
HMGB1-205ENST00000399494 TRMT44Q8IYL2 757 aaKnown RBP34.62■■■■□ 3.13
HMGB1-205ENST00000399494 PAGR1Q9BTK6 254 aa34.62■■■■□ 3.13
HMGB1-205ENST00000399494 EXOC6BQ9Y2D4 811 aa34.62■■■■□ 3.13
HMGB1-205ENST00000399494 HMMRO75330 724 aa34.61■■■■□ 3.13
HMGB1-205ENST00000399494 GPR142Q7Z601 462 aa34.61■■■■□ 3.13
HMGB1-205ENST00000399494 TTC6Q86TZ1 520 aa34.61■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms