RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GPT2Q8TD30 523 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 NCOA5Q9HCD5 579 aaKnown RBP21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 SRCAPQ6ZRS2 3230 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 JAK2O60674 1132 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 TNIP1Q15025 636 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 SEC23AQ15436 765 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 ZNF654Q8IZM8 581 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 ZKSCAN3Q9BRR0 538 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 DHX36Q9H2U1 1008 aaKnown RBP21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 TMOD2Q9NZR1 351 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 SWAP70Q9UH65 585 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 MTMR6Q9Y217 621 aa21.2■□□□□ 0.98
CCDC88C-203ENST00000389856 WDHD1O75717 1129 aaPredicted RBP21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 DDAH1O94760 285 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 TSPY3P0CV98 308 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 TSPY8P0CW00 308 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 PICALMQ13492 652 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 RTN1Q16799 776 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 ENAHQ8N8S7 591 aaPredicted RBP21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 WASF1Q92558 559 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 DDX11Q96FC9 970 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 PANK2Q9BZ23 570 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 TCP11L1Q9NUJ3 509 aa21.19■□□□□ 0.98
CCDC88C-203ENST00000389856 CTDNEP1O95476 244 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 TFAP4Q01664 338 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 CCDC173Q0VFZ6 552 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 DGKHQ86XP1 1220 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 IDI2Q9BXS1 227 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 OSBPL5Q9H0X9 879 aaPredicted RBP21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 RBM28Q9NW13 759 aaKnown RBP21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 PPP4R3BQ5MIZ7 849 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 FOXD4L5Q5VV16 416 aaPredicted RBP21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 TRIM22Q8IYM9 498 aa21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 FOXD4L4Q8WXT5 416 aaPredicted RBP21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 ZSCAN16Q9H4T2 348 aaPredicted RBP21.18■□□□□ 0.98
CCDC88C-203ENST00000389856 STK36Q9NRP7 1315 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 PSMD14O00487 310 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 RAD17O75943 681 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 NASPP49321 788 aaPredicted RBP21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 CDK8P49336 464 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 PLCD1P51178 756 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 CFAP100Q494V2 611 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 CIAPIN1Q6FI81 312 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 ORC3Q9UBD5 711 aaPredicted RBP21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 ADAMTSL1Q8N6G6 1762 aa21.17■□□□□ 0.98
CCDC88C-203ENST00000389856 LRSAM1Q6UWE0 723 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 NKX2-3Q8TAU0 364 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 ANKS1AQ92625 1134 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 DYNLL2Q96FJ2 89 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 PPP1R9BQ96SB3 815 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 EHD4Q9H223 541 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 KAT14Q9H8E8 782 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 SERPINB13Q9UIV8 391 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 MYH8P13535 1937 aa21.16■□□□□ 0.98
CCDC88C-203ENST00000389856 COL2A1P02458 1487 aaPredicted RBP21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 ENTPD3O75355 529 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 SSRP1Q08945 709 aaKnown RBP21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 DLGAP5Q15398 846 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 SLC4A8Q2Y0W8 1093 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 FAM47AQ5JRC9 791 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 FANCBQ8NB91 859 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 NUP133Q8WUM0 1156 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 IFNAR1P17181 557 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 RASA1P20936 1047 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 RPS12P25398 132 aaKnown RBP21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 CTCFLQ8NI51 663 aaPredicted RBP21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 GMLQ99445 158 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 TRIM34Q9BYJ4 488 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 SENP2Q9HC62 589 aa21.15■□□□□ 0.98
CCDC88C-203ENST00000389856 SMIM22K7EJ46 135 aa21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 NFKBIEO00221 500 aa21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 LETM1O95202 739 aaPredicted RBP21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 KIF5BP33176 963 aa21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 NEDD1Q8NHV4 660 aa21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 C8orf76Q96K31 380 aa21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 MAP3K14Q99558 947 aa21.14■□□□□ 0.97
CCDC88C-203ENST00000389856 MYO1BO43795 1136 aa21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 ADD1P35611 737 aaKnown RBP21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 EIF6P56537 245 aaKnown RBP21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 AKAP17AQ02040 695 aaKnown RBP21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 TRIM29Q14134 588 aa21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 RAB11FIP4Q86YS3 637 aa21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 MTMR14Q8NCE2 650 aa21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 DDX4Q9NQI0 724 aaKnown RBP21.13■□□□□ 0.97
CCDC88C-203ENST00000389856 COL4A5P29400 1685 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 CXCL9Q07325 125 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 CDC37L1Q7L3B6 337 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 CCDC144CPQ8IYA2 1237 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 CRACR2BQ8N4Y2 399 aaPredicted RBP21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 MYL10Q9BUA6 226 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 TMEM63CQ9P1W3 806 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 PI4KBQ9UBF8 816 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 PLIN4Q96Q06 1357 aa21.12■□□□□ 0.97
CCDC88C-203ENST00000389856 SPDYE2BA6NHP3 402 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 FMNL1O95466 1100 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 SPDYE6P0CI01 402 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 RXRAP19793 462 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 CDC27P30260 824 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 UBE2HP62256 183 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 EVX2Q03828 476 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms