RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CSRNP2Q9H175 543 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 IFIT3O14879 490 aaKnown RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 PHACTR2O75167 634 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 SSRP1Q08945 709 aaKnown RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 METTL24Q5JXM2 366 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 NUTM2AQ8IVF1 878 aaPredicted RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 IGSF22Q8N9C0 903 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 PIGBQ92521 554 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 EPB41L4AQ9HCS5 686 aaPredicted RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 ABCB6Q9NP58 842 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 AKAP2Q9Y2D5 859 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 SOS2Q07890 1332 aaPredicted RBP21.04■□□□□ 0.96
CCDC3-201ENST00000378825 LAMB4A4D0S4 1761 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 A0A1B0GTH6 734 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 CCDC151A5D8V7 595 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 MUM1L1Q5H9M0 696 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 MLKLQ8NB16 471 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 EPSTI1Q96J88 318 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 WDR19Q8NEZ3 1342 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 RNF225M0QZC1 329 aaPredicted RBP21.04■□□□□ 0.96
CCDC3-201ENST00000378825 MMP1P03956 469 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 TCIRG1Q13488 830 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 SLC12A7Q9Y666 1083 aa21.04■□□□□ 0.96
CCDC3-201ENST00000378825 hCG_1642624A0A1W2PR95 340 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 CASP14P31944 242 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 PHKA1P46020 1223 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 FXR1P51114 621 aaKnown RBP eCLIP21.03■□□□□ 0.96
CCDC3-201ENST00000378825 NT5DC1Q5TFE4 455 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 SLC35F6Q8N357 371 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 ISCA1Q9BUE6 129 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 ATG3Q9NT62 314 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 RIC1Q4ADV7 1423 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 WNT7AO00755 349 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 GPS2Q13227 327 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 HLFQ16534 295 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 TICAM2Q86XR7 235 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 SHISA4Q96DD7 197 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 AKAP11Q9UKA4 1901 aa21.03■□□□□ 0.96
CCDC3-201ENST00000378825 MYH7P12883 1935 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 NUP188Q5SRE5 1749 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 SMIM22K7EJ46 135 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 VSNL1P62760 191 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 DPYDQ12882 1025 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 KIF4BQ2VIQ3 1234 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 HELBQ8NG08 1087 aaPredicted RBP21.02■□□□□ 0.96
CCDC3-201ENST00000378825 CABP5Q9NP86 173 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 TOMM22Q9NS69 142 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 RNF216Q9NWF9 866 aaPredicted RBP21.02■□□□□ 0.96
CCDC3-201ENST00000378825 FAN1Q9Y2M0 1017 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 MYO1CO00159 1063 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 PDE6AP16499 860 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 CCT6AP40227 531 aaKnown RBP21.02■□□□□ 0.96
CCDC3-201ENST00000378825 IFIT5Q13325 482 aaKnown RBP21.02■□□□□ 0.96
CCDC3-201ENST00000378825 EARS2Q5JPH6 523 aaKnown RBP21.02■□□□□ 0.96
CCDC3-201ENST00000378825 GREM2Q9H772 168 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 CDC23Q9UJX2 597 aa21.02■□□□□ 0.96
CCDC3-201ENST00000378825 PRKAB2O43741 272 aa21.01■□□□□ 0.95
CCDC3-201ENST00000378825 MYO1BO43795 1136 aa21.01■□□□□ 0.95
CCDC3-201ENST00000378825 FMNL1O95466 1100 aaPredicted RBP21.01■□□□□ 0.95
CCDC3-201ENST00000378825 PLCD1P51178 756 aa21.01■□□□□ 0.95
CCDC3-201ENST00000378825 LDHAL6AQ6ZMR3 332 aa21.01■□□□□ 0.95
CCDC3-201ENST00000378825 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.01■□□□□ 0.95
CCDC3-201ENST00000378825 NOA1Q8NC60 698 aaKnown RBP21.01■□□□□ 0.95
CCDC3-201ENST00000378825 ANKRD65E5RJM6 399 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 NOM1Q5C9Z4 860 aaKnown RBP21■□□□□ 0.95
CCDC3-201ENST00000378825 EXOC4Q96A65 974 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 STRBPQ96SI9 672 aaKnown RBP21■□□□□ 0.95
CCDC3-201ENST00000378825 RIPOR2Q9Y4F9 1068 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 MYH8P13535 1937 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 GYPCP04921 128 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 BRD3Q15059 726 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 JAKMIP3Q5VZ66 844 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 KIF6Q6ZMV9 814 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 XIRP1Q702N8 1843 aaKnown RBP21■□□□□ 0.95
CCDC3-201ENST00000378825 SGMS1Q86VZ5 419 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 TMEM87BQ96K49 555 aa21■□□□□ 0.95
CCDC3-201ENST00000378825 PARP4Q9UKK3 1724 aaKnown RBP21■□□□□ 0.95
CCDC3-201ENST00000378825 KIF5CO60282 957 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 PPFIBP1Q86W92 1011 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 RGS22Q8NE09 1264 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 PANX2Q96RD6 677 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 ARMT1Q9H993 441 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 BTG4Q9NY30 223 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 ADD3Q9UEY8 706 aaKnown RBP20.99■□□□□ 0.95
CCDC3-201ENST00000378825 TFR2Q9UP52 801 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 PLEKHG2Q9H7P9 1386 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 SLC20A2Q08357 652 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 NUP133Q8WUM0 1156 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 AIDAQ96BJ3 306 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 PLEKHA4Q9H4M7 779 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 TRIM10Q9UDY6 481 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 HOOK1Q9UJC3 728 aaKnown RBP20.99■□□□□ 0.95
CCDC3-201ENST00000378825 L1RE1Q9UN81 338 aa20.99■□□□□ 0.95
CCDC3-201ENST00000378825 MFAP3LO75121 409 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 ITGA6P23229 1130 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 ERVK-24P63145 666 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 NCAPH2Q6IBW4 605 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 AK7Q96M32 723 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 SYNRGQ9UMZ2 1314 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 TCRBV5S4A2TA0A5A2 114 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms