RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 CARMIL3Q8ND23 1372 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 USP17L3A6NCW0 530 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 USP17L4A6NCW7 530 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 PHF20L1A8MW92 1017 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 HNRNPCP07910 306 aaKnown RBP eCLIP4.69□□□□□ -1.66
MCF2-203ENST00000370576 CAP2P40123 477 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 RFX5P48382 616 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 SAFB2Q14151 953 aaKnown RBP eCLIP4.69□□□□□ -1.66
MCF2-203ENST00000370576 PKN2Q16513 984 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 USP17L2Q6R6M4 530 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 USP17L1Q7RTZ2 530 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 ZNF654Q8IZM8 581 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 KAZALD1Q96I82 304 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 FAM129BQ96TA1 746 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 PDGFDQ9GZP0 370 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 ATG3Q9NT62 314 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 GINM1Q9NU53 330 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 RBBP6Q7Z6E9 1792 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 MAPK8IP3Q9UPT6 1336 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 SCGB1D2O95969 90 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 USP5P45974 858 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 PNMA8AQ86V59 439 aaPredicted RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 CCDC89Q8N998 374 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 TRPM4Q8TD43 1214 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 GCC1Q96CN9 775 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 INTUQ9ULD6 942 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 CNTNAP4Q9C0A0 1308 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 SHTN1A0MZ66 631 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 H3BRB1 525 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 RHOBTB3O94955 611 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 F2P00734 622 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 BPIFB3P59826 476 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 TWISTNBQ3B726 338 aaPredicted RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 DZIP1LQ8IYY4 767 aaKnown RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 VPS37AQ8NEZ2 397 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 PXYLP1Q8TE99 480 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 SETDB2Q96T68 719 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 TUT1Q9H6E5 874 aaKnown RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 PRM3Q9NNZ6 103 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 SMYD2Q9NRG4 433 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 PCDHB8Q9UN66 801 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 ATP8A1Q9Y2Q0 1164 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 PCDHB13Q9Y5F0 798 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 POTECB2RU33 542 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 hCG_1984214I3L0E3 225 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 FOXO3O43524 673 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 TOM1O60784 492 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 MYL3P08590 195 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 HCLS1P14317 486 aaPredicted RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 BCAMP50895 628 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 CCT4P50991 539 aaKnown RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 ALFQ53S48 1182 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 RPAP2Q8IXW5 612 aaPredicted RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 AGAP3Q96P47 875 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 MPHOSPH6Q99547 160 aaKnown RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 VPS33BQ9H267 617 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 CDHR5Q9HBB8 845 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 EPS15L1Q9UBC2 864 aa4.68□□□□□ -1.66
MCF2-203ENST00000370576 NOB1Q9ULX3 412 aaKnown RBP4.68□□□□□ -1.66
MCF2-203ENST00000370576 CNOT4O95628 575 aaKnown RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 RPL17P18621 184 aaKnown RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 ZNF211Q13398 564 aaPredicted RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 TOGARAM2Q6ZUX3 1019 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 ISCA1Q9BUE6 129 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.67□□□□□ -1.66
MCF2-203ENST00000370576 TMX4Q9H1E5 349 aaPredicted RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 FANCLQ9NW38 375 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 PCDH10Q9P2E7 1040 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 RFPL1O75677 317 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 CD46P15529 392 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 DSG3P32926 999 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 TM4SF4P48230 202 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 RAB33AQ14088 237 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 GRAMD1BQ3KR37 738 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 TM4SF20Q53R12 229 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 JAKMIP3Q5VZ66 844 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 PPP4R3AQ6IN85 833 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 CEP85Q6P2H3 762 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 CYP26C1Q6V0L0 522 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 NFXL1Q6ZNB6 911 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 ERMP1Q7Z2K6 904 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 MILR1Q7Z6M3 343 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 IFNL2Q8IZJ0 200 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.67□□□□□ -1.66
MCF2-203ENST00000370576 ITFG2Q969R8 447 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 CCDC113Q9H0I3 377 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 CDH19Q9H159 772 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 ZHX3Q9H4I2 956 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 ZNF408Q9H9D4 720 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 DDX21Q9NR30 783 aaKnown RBP eCLIP4.67□□□□□ -1.66
MCF2-203ENST00000370576 A0A087X0B3 334 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 IPO8O15397 1037 aaKnown RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 MAP3K7O43318 606 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 PRPF3O43395 683 aaKnown RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 CDC45O75419 566 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 SKILP12757 684 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 CC2D1AQ6P1N0 951 aaPredicted RBP4.67□□□□□ -1.66
MCF2-203ENST00000370576 BRSK2Q8IWQ3 736 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 TMEM57Q8N5G2 664 aa4.67□□□□□ -1.66
MCF2-203ENST00000370576 HELQQ8TDG4 1101 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 1246.7 ms