RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 BMS1Q14692 1282 aaKnown RBP11.39□□□□□ -0.59
CHD3-201ENST00000330494 EFCAB6Q5THR3 1501 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 TLDC2A0PJX2 215 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 PPP1R7Q15435 360 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 ARHGAP27Q6ZUM4 889 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 IFNL3Q8IZI9 196 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 LLPHQ9BRT6 129 aaKnown RBP11.39□□□□□ -0.59
CHD3-201ENST00000330494 NOD1Q9Y239 953 aa11.39□□□□□ -0.59
CHD3-201ENST00000330494 IBTKQ9P2D0 1353 aaPredicted RBP11.39□□□□□ -0.59
CHD3-201ENST00000330494 MAST3O60307 1309 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 MYOM2P54296 1465 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 HERC4Q5GLZ8 1057 aaPredicted RBP11.38□□□□□ -0.59
CHD3-201ENST00000330494 ZNF654Q8IZM8 581 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 GOLGA1Q92805 767 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 MRPL44Q9H9J2 332 aaKnown RBP11.38□□□□□ -0.59
CHD3-201ENST00000330494 CNNM4Q6P4Q7 775 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 CABP7Q86V35 215 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 PLEKHF1Q96S99 279 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 PLEKHA4Q9H4M7 779 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 SEC31BQ9NQW1 1179 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 AOX1Q06278 1338 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 SMCO2A6NFE2 343 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 ZBED4O75132 1171 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 HSPA4P34932 840 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 ADD1P35611 737 aaKnown RBP11.38□□□□□ -0.59
CHD3-201ENST00000330494 WDR44Q5JSH3 913 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 KRT222Q8N1A0 295 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 TEKT1Q969V4 418 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 LRWD1Q9UFC0 647 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 COBLO75128 1261 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 STAMBPO95630 424 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 RPL13P26373 211 aaKnown RBP11.38□□□□□ -0.59
CHD3-201ENST00000330494 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.38□□□□□ -0.59
CHD3-201ENST00000330494 ABCC4O15439 1325 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 CLRN2A0PK11 232 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 TECP42680 631 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 STRN3Q13033 797 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 PRIMPOLQ96LW4 560 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 MAK16Q9BXY0 300 aaKnown RBP11.38□□□□□ -0.59
CHD3-201ENST00000330494 IVNS1ABPQ9Y6Y0 642 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 NPC1L1Q9UHC9 1359 aa11.38□□□□□ -0.59
CHD3-201ENST00000330494 CLCN1P35523 988 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 LRMPQ12912 555 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 PAK1Q13153 545 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 NONOQ15233 471 aaKnown RBP eCLIP11.37□□□□□ -0.59
CHD3-201ENST00000330494 SMTNP53814 917 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 FANCCQ00597 558 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 POSTNQ15063 836 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 IFT74Q96LB3 600 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 TRIM6Q9C030 488 aaPredicted RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 RSPH14Q9UHP6 348 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 AGTPBP1Q9UPW5 1226 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 ZBTB1Q9Y2K1 713 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 PABPN1LA6NDY0 278 aaKnown RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 CUTAO60888 179 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 PDE6BP35913 854 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 PKP1Q13835 747 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 GPHNQ9NQX3 736 aaPredicted RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 TPCN1Q9ULQ1 816 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 ARHGEF5Q12774 1597 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 PDE6AP16499 860 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 BTDP43251 543 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 LMBR1Q8WVP7 490 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 GTPBP4Q9BZE4 634 aaKnown RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 TESPA1A2RU30 521 aaPredicted RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 CLGNO14967 610 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 SLU7O95391 586 aaKnown RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 HSPD1P10809 573 aaKnown RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 NELFBQ8WX92 580 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 IQCGQ9H095 443 aaKnown RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 MAP3K15Q6ZN16 1313 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 FAM135BQ49AJ0 1406 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 FGAP02671 866 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 KRT19P08727 400 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 TNFAIP3P21580 790 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 UAP1Q16222 522 aaPredicted RBP11.37□□□□□ -0.59
CHD3-201ENST00000330494 ERFEQ4G0M1 354 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 DNM3Q9UQ16 869 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 KDM5CP41229 1560 aa11.37□□□□□ -0.59
CHD3-201ENST00000330494 IRX5P78411 483 aaPredicted RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 GPR162Q16538 588 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 HAUS3Q68CZ6 603 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 GADL1Q6ZQY3 521 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 UNC5CLQ8IV45 518 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 GPR101Q96P66 508 aaPredicted RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 ZSCAN10Q96SZ4 725 aaPredicted RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 SERTAD1Q9UHV2 236 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 ROBO2Q9HCK4 1378 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 M0R2C6 588 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 CALUO43852 315 aaPredicted RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 ASIC2Q16515 512 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 UBLCP1Q8WVY7 318 aaPredicted RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 ATRIPQ8WXE1 791 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 CLSTN2Q9H4D0 955 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 USTQ9Y2C2 406 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 H7C1D1 291 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 TBC1D10BQ4KMP7 808 aaPredicted RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 SPICE1Q8N0Z3 855 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 DSCC1Q9BVC3 393 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 SSX2IPQ9Y2D8 614 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms