RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 TERF2Q15554 542 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 NT5DC1Q5TFE4 455 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 ZNF34Q8IZ26 560 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 UBAC1Q9BSL1 405 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 CARD6Q9BX69 1037 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 CSRNP2Q9H175 543 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 PARP3Q9Y6F1 533 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 A0A0G2JS52 829 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 ERVV-1B6SEH8 477 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 SARSP49591 514 aaKnown RBP25.13■■□□□ 1.61
SHMT1-201ENST00000316694 BMS1Q14692 1282 aaKnown RBP25.13■■□□□ 1.61
SHMT1-201ENST00000316694 ENOX1Q8TC92 643 aaKnown RBP25.13■■□□□ 1.61
SHMT1-201ENST00000316694 SAMSN1Q9NSI8 373 aaKnown RBP25.13■■□□□ 1.61
SHMT1-201ENST00000316694 SRPRBQ9Y5M8 271 aaKnown RBP25.13■■□□□ 1.61
SHMT1-201ENST00000316694 TIAM2Q8IVF5 1701 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 DOCK2Q92608 1830 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 TOGARAM2Q6ZUX3 1019 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 TC2NQ8N9U0 490 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 DISP2A7MBM2 1401 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 ARAP2Q8WZ64 1704 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 MINDY4BA8MYZ0 360 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 IL6STP40189 918 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-201ENST00000316694 SUSD4Q5VX71 490 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 CEP131Q9UPN4 1083 aa25.12■■□□□ 1.61
SHMT1-201ENST00000316694 IQSEC3Q9UPP2 1182 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-201ENST00000316694 SLIT2O94813 1529 aa25.11■■□□□ 1.61
SHMT1-201ENST00000316694 ACTN4O43707 911 aaKnown RBP25.11■■□□□ 1.61
SHMT1-201ENST00000316694 GNG11P61952 73 aa25.11■■□□□ 1.61
SHMT1-201ENST00000316694 TMTC2Q8N394 836 aa25.11■■□□□ 1.61
SHMT1-201ENST00000316694 ZNF579Q8NAF0 562 aaKnown RBP25.11■■□□□ 1.61
SHMT1-201ENST00000316694 SRRTQ9BXP5 876 aaKnown RBP25.11■■□□□ 1.61
SHMT1-201ENST00000316694 NUTM2AQ8IVF1 878 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-201ENST00000316694 MED15Q96RN5 788 aa25.11■■□□□ 1.61
SHMT1-201ENST00000316694 PNPLA7Q6ZV29 1317 aa25.11■■□□□ 1.61
SHMT1-201ENST00000316694 LRP5O75197 1615 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 NHSL1Q5SYE7 1610 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 STX10O60499 249 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 PPARAQ07869 468 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 SDR42E1Q8WUS8 393 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 WDR24Q96S15 920 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 RNF41Q9H4P4 317 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-201ENST00000316694 FHOD1Q9Y613 1164 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 FAM205CA6NFA0 338 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 TADA3O75528 432 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 CASQ1P31415 396 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 DHX58Q96C10 678 aa25.1■■□□□ 1.61
SHMT1-201ENST00000316694 ARGLU1Q9NWB6 273 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-201ENST00000316694 KANK3Q6NY19 840 aa25.09■■□□□ 1.61
SHMT1-201ENST00000316694 TRIML1Q8N9V2 468 aa25.09■■□□□ 1.61
SHMT1-201ENST00000316694 RAI14Q9P0K7 980 aa25.09■■□□□ 1.61
SHMT1-201ENST00000316694 hCG_1642624A0A1W2PR95 340 aa25.09■■□□□ 1.61
SHMT1-201ENST00000316694 AKAP17AQ02040 695 aaKnown RBP25.09■■□□□ 1.61
SHMT1-201ENST00000316694 DESI2Q9BSY9 194 aa25.09■■□□□ 1.61
SHMT1-201ENST00000316694 VPS54Q9P1Q0 977 aa25.09■■□□□ 1.61
SHMT1-201ENST00000316694 TNKSO95271 1327 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 CYP7A1P22680 504 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 AFMP43652 599 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 PLCD1P51178 756 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 KLHL10Q6JEL2 608 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 EFCAB8A8MWE9 144 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 SMIM22K7EJ46 135 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 TMCO3Q6UWJ1 677 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 ABCF2Q9UG63 623 aa25.08■■□□□ 1.61
SHMT1-201ENST00000316694 GOLGA6L9A6NEM1 432 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 PNMA6AP0CW24 399 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-201ENST00000316694 ADGRA1Q86SQ6 560 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 EPSTI1Q96J88 318 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 MYH6P13533 1939 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 TRIM75PA6NK02 468 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 IGHMBP2P38935 993 aaKnown RBP25.07■■□□□ 1.6
SHMT1-201ENST00000316694 SHISA4Q96DD7 197 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 AK7Q96M32 723 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 EPC1Q9H2F5 836 aa25.07■■□□□ 1.6
SHMT1-201ENST00000316694 PRDM1O75626 825 aa25.06■■□□□ 1.6
SHMT1-201ENST00000316694 A0A087X0B3 334 aa25.06■■□□□ 1.6
SHMT1-201ENST00000316694 CASP1P29466 404 aa25.06■■□□□ 1.6
SHMT1-201ENST00000316694 EIF5P55010 431 aaKnown RBP25.06■■□□□ 1.6
SHMT1-201ENST00000316694 STX17P56962 302 aa25.06■■□□□ 1.6
SHMT1-201ENST00000316694 NR1I3Q14994 352 aa25.06■■□□□ 1.6
SHMT1-201ENST00000316694 ESR2Q92731 530 aa25.06■■□□□ 1.6
SHMT1-201ENST00000316694 XBP1P17861 261 aa25.05■■□□□ 1.6
SHMT1-201ENST00000316694 KARSQ15046 597 aaKnown RBP25.05■■□□□ 1.6
SHMT1-201ENST00000316694 EARS2Q5JPH6 523 aaKnown RBP25.05■■□□□ 1.6
SHMT1-201ENST00000316694 INTS5Q6P9B9 1019 aaKnown RBP25.05■■□□□ 1.6
SHMT1-201ENST00000316694 SPATA20Q8TB22 786 aa25.05■■□□□ 1.6
SHMT1-201ENST00000316694 RNF26Q9BY78 433 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-201ENST00000316694 BCORQ6W2J9 1755 aa25.05■■□□□ 1.6
SHMT1-201ENST00000316694 ERCC5P28715 1186 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-201ENST00000316694 RCAN1P53805 252 aa25.05■■□□□ 1.6
SHMT1-201ENST00000316694 MTF1Q14872 753 aa25.05■■□□□ 1.6
SHMT1-201ENST00000316694 NOL10Q9BSC4 688 aaKnown RBP25.05■■□□□ 1.6
SHMT1-201ENST00000316694 MTA3Q9BTC8 594 aa25.05■■□□□ 1.6
SHMT1-201ENST00000316694 TEX33O43247 280 aa25.04■■□□□ 1.6
SHMT1-201ENST00000316694 SEC23AQ15436 765 aa25.04■■□□□ 1.6
SHMT1-201ENST00000316694 CCDC152Q4G0S7 254 aa25.04■■□□□ 1.6
SHMT1-201ENST00000316694 ACSBG1Q96GR2 724 aa25.04■■□□□ 1.6
SHMT1-201ENST00000316694 RTL9Q8NET4 1388 aa25.04■■□□□ 1.6
SHMT1-201ENST00000316694 CCDC34Q96HJ3 373 aa25.04■■□□□ 1.6
SHMT1-201ENST00000316694 A0A1B0GTH6 734 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 SEC31AO94979 1220 aaKnown RBP25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms