RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GOLGA8OA6NCC3 632 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 GOLGA8NF8WBI6 632 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 MTX1Q13505 466 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 POSTNQ15063 836 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 EFCAB13Q8IY85 973 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 MAGEB6Q8N7X4 407 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 CHMLP26374 656 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 LRRC43Q8N309 656 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 NSMCE1Q8WV22 266 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 DCTPP1Q9H773 170 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 EFCC1Q9HA90 598 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 HELLSQ9NRZ9 838 aa15.34■□□□□ 0.05
CSPG4-201ENST00000308508 PPP2R5DQ14738 602 aa15.33■□□□□ 0.05
CSPG4-201ENST00000308508 LETM2Q2VYF4 491 aa15.33■□□□□ 0.05
CSPG4-201ENST00000308508 PALM2Q8IXS6 379 aa15.33■□□□□ 0.05
CSPG4-201ENST00000308508 C17orf53Q8N3J3 647 aaPredicted RBP15.33■□□□□ 0.05
CSPG4-201ENST00000308508 CFAP61Q8NHU2 1237 aa15.33■□□□□ 0.05
CSPG4-201ENST00000308508 ANKFY1Q9P2R3 1169 aa15.33■□□□□ 0.05
CSPG4-201ENST00000308508 BAG5Q9UL15 447 aa15.33■□□□□ 0.05
CSPG4-201ENST00000308508 APBA1Q02410 837 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 MCM9Q9NXL9 1143 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 EPS15L1Q9UBC2 864 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 BACH1O14867 736 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 MAN1A1P33908 653 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 GUCY2FP51841 1108 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 LONRF2Q1L5Z9 754 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 NLRP7Q8WX94 980 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 GLT8D2Q9H1C3 349 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 PICALMQ13492 652 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 NBPF5PQ86XG9 351 aaPredicted RBP15.33■□□□□ 0.04
CSPG4-201ENST00000308508 TRIM6Q9C030 488 aaPredicted RBP15.33■□□□□ 0.04
CSPG4-201ENST00000308508 CDAN1Q8IWY9 1227 aa15.33■□□□□ 0.04
CSPG4-201ENST00000308508 GNA14O95837 355 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 PPP2R5CQ13362 524 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 MRPL46Q9H2W6 279 aaKnown RBP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 ESRRGP62508 458 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 STRN3Q13033 797 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 MRPL50Q8N5N7 158 aaKnown RBP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 RSAD2Q8WXG1 361 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 SPDL1Q96EA4 605 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 SLF1Q9BQI6 1058 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 PLEKHM2Q8IWE5 1019 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 NFE2L3Q9Y4A8 694 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 SUN1O94901 812 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 RAD51AP2Q09MP3 1159 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 ANKRD20A4Q4UJ75 823 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 ANKRD20A8PQ5CZ79 823 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 ANKRD20A2Q5SQ80 823 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 ANKRD20A1Q5TYW2 823 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 RIC8AQ9NPQ8 531 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 FAM83GA6ND36 823 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 NXNQ6DKJ4 435 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 PAXIP1Q6ZW49 1069 aaPredicted RBP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 WAPLQ7Z5K2 1190 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 C16orf71Q8IYS4 520 aaPredicted RBP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 OGFOD1Q8N543 542 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 SOS1Q07889 1333 aaPredicted RBP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 SF3A3Q12874 501 aaKnown RBP eCLIP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 PROCA1Q8NCQ7 364 aaPredicted RBP15.32■□□□□ 0.04
CSPG4-201ENST00000308508 VTI1AQ96AJ9 217 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 TMEM87BQ96K49 555 aa15.32■□□□□ 0.04
CSPG4-201ENST00000308508 RNF8O76064 485 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 NELFBQ8WX92 580 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 ZC4H2Q9NQZ6 224 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 AMOTL2Q9Y2J4 779 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 APOEP02649 317 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 ATP1A2P50993 1020 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 KSR2Q6VAB6 950 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 MUM1L1Q5H9M0 696 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 KDM2BQ8NHM5 1336 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 MAPK8IP1Q9UQF2 711 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 USTQ9Y2C2 406 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 PPARDQ03181 441 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 LRGUKQ96M69 825 aa15.31■□□□□ 0.04
CSPG4-201ENST00000308508 LONRF3Q496Y0 759 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 LRRC23Q53EV4 343 aaPredicted RBP15.3■□□□□ 0.04
CSPG4-201ENST00000308508 PDCD7Q8N8D1 485 aaKnown RBP15.3■□□□□ 0.04
CSPG4-201ENST00000308508 RFC4P35249 363 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 DMTNQ08495 405 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 WASLO00401 505 aaPredicted RBP15.3■□□□□ 0.04
CSPG4-201ENST00000308508 KRIT1O00522 736 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 RXRAP19793 462 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 CEP85Q6P2H3 762 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 TTC4O95801 387 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 CCDC169A6NNP5 214 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 EXOC5O00471 708 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 ZNF500O60304 480 aaPredicted RBP15.3■□□□□ 0.04
CSPG4-201ENST00000308508 RNASELQ05823 741 aaKnown RBP15.3■□□□□ 0.04
CSPG4-201ENST00000308508 HYOU1Q9Y4L1 999 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 THAP12O43422 761 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 TYW1BQ6NUM6 668 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 ORC6Q9Y5N6 252 aa15.3■□□□□ 0.04
CSPG4-201ENST00000308508 FRMD3A2A2Y4 597 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 CTAGE3PQ8IX95 158 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 HAUS1Q96CS2 278 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 GDAP1L1Q96MZ0 367 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 TAB2Q9NYJ8 693 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 FBXO41Q8TF61 875 aa15.29■□□□□ 0.04
CSPG4-201ENST00000308508 JARID2Q92833 1246 aaPredicted RBP15.29■□□□□ 0.04
CSPG4-201ENST00000308508 DKC1O60832 514 aaKnown RBP eCLIP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms