RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 SHISA4Q96DD7 197 aa17.09■□□□□ 0.33
TPM1-202ENST00000288398 UNC93B1Q9H1C4 597 aa17.09■□□□□ 0.33
TPM1-202ENST00000288398 CWC22Q9HCG8 908 aaKnown RBP17.09■□□□□ 0.33
TPM1-202ENST00000288398 PHIPQ8WWQ0 1821 aa17.09■□□□□ 0.33
TPM1-202ENST00000288398 PTPRFP10586 1907 aa17.09■□□□□ 0.33
TPM1-202ENST00000288398 MGAMO43451 1857 aa17.08■□□□□ 0.33
TPM1-202ENST00000288398 ATAD5Q96QE3 1844 aa17.08■□□□□ 0.33
TPM1-202ENST00000288398 FARP2O94887 1054 aaPredicted RBP17.08■□□□□ 0.32
TPM1-202ENST00000288398 DYNLL1P63167 89 aaKnown RBP17.08■□□□□ 0.32
TPM1-202ENST00000288398 RRP1BQ14684 758 aaKnown RBP17.08■□□□□ 0.32
TPM1-202ENST00000288398 TTF1Q15361 905 aaPredicted RBP17.08■□□□□ 0.32
TPM1-202ENST00000288398 TTC6Q86TZ1 520 aa17.08■□□□□ 0.32
TPM1-202ENST00000288398 FEZ1Q99689 392 aa17.08■□□□□ 0.32
TPM1-202ENST00000288398 BCL11AQ9H165 835 aa17.08■□□□□ 0.32
TPM1-202ENST00000288398 CHMP4BQ9H444 224 aaKnown RBP17.08■□□□□ 0.32
TPM1-202ENST00000288398 ZBTB21Q9ULJ3 1066 aa17.08■□□□□ 0.32
TPM1-202ENST00000288398 NR2E3Q9Y5X4 410 aa17.08■□□□□ 0.32
TPM1-202ENST00000288398 MKI67P46013 3256 aaKnown RBP17.08■□□□□ 0.32
TPM1-202ENST00000288398 H0YGN5 161 aa17.07■□□□□ 0.32
TPM1-202ENST00000288398 SGPL1O95470 568 aa17.07■□□□□ 0.32
TPM1-202ENST00000288398 CLASRPQ8N2M8 674 aaKnown RBP17.07■□□□□ 0.32
TPM1-202ENST00000288398 DEFB118Q96PH6 123 aa17.07■□□□□ 0.32
TPM1-202ENST00000288398 LOC285556D6RIA3 1793 aa17.07■□□□□ 0.32
TPM1-202ENST00000288398 APBB1O00213 710 aa17.06■□□□□ 0.32
TPM1-202ENST00000288398 IFIT2P09913 472 aaKnown RBP17.06■□□□□ 0.32
TPM1-202ENST00000288398 PDE3AQ14432 1141 aa17.06■□□□□ 0.32
TPM1-202ENST00000288398 USP17L2Q6R6M4 530 aa17.06■□□□□ 0.32
TPM1-202ENST00000288398 GTF3C2Q8WUA4 911 aaPredicted RBP17.06■□□□□ 0.32
TPM1-202ENST00000288398 IL1RAPL2Q9NP60 686 aa17.06■□□□□ 0.32
TPM1-202ENST00000288398 SERPINB13Q9UIV8 391 aa17.06■□□□□ 0.32
TPM1-202ENST00000288398 HMGCRP04035 888 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 METTL16Q86W50 562 aaKnown RBP17.05■□□□□ 0.32
TPM1-202ENST00000288398 GPRC5AQ8NFJ5 357 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 DNAJC18Q9H819 358 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 CABP5Q9NP86 173 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 DDX19BQ9UMR2 479 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 COLQQ9Y215 455 aaPredicted RBP17.05■□□□□ 0.32
TPM1-202ENST00000288398 NDUFB9Q9Y6M9 179 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 BRCA2P51587 3418 aa17.05■□□□□ 0.32
TPM1-202ENST00000288398 MAGEB6P1A0A0J9YX57 407 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 GH2P01242 217 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 POLR3DP05423 398 aaPredicted RBP17.04■□□□□ 0.32
TPM1-202ENST00000288398 HOXA7P31268 230 aaPredicted RBP17.04■□□□□ 0.32
TPM1-202ENST00000288398 HERVK_113P62684 666 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 RAB3GAP1Q15042 981 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 RPAP2Q8IXW5 612 aaPredicted RBP17.04■□□□□ 0.32
TPM1-202ENST00000288398 RHPN1Q8TCX5 695 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 SOCS4Q8WXH5 440 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 KIF1BPQ96EK5 621 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 CRNKL1Q9BZJ0 848 aaKnown RBP17.04■□□□□ 0.32
TPM1-202ENST00000288398 MORF4L1Q9UBU8 362 aa17.04■□□□□ 0.32
TPM1-202ENST00000288398 MAPK4P31152 587 aa17.03■□□□□ 0.32
TPM1-202ENST00000288398 USP14P54578 494 aa17.03■□□□□ 0.32
TPM1-202ENST00000288398 CERKLQ49MI3 558 aaPredicted RBP17.03■□□□□ 0.32
TPM1-202ENST00000288398 DNAJC2Q99543 621 aaKnown RBP17.03■□□□□ 0.32
TPM1-202ENST00000288398 P2RX7Q99572 595 aaKnown RBP17.03■□□□□ 0.32
TPM1-202ENST00000288398 NUDT12Q9BQG2 462 aa17.03■□□□□ 0.32
TPM1-202ENST00000288398 PAGR1Q9BTK6 254 aa17.03■□□□□ 0.32
TPM1-202ENST00000288398 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.03■□□□□ 0.32
TPM1-202ENST00000288398 EHD4Q9H223 541 aa17.03■□□□□ 0.32
TPM1-202ENST00000288398 ANTXR1Q9H6X2 564 aa17.03■□□□□ 0.32
TPM1-202ENST00000288398 HMX1Q9NP08 348 aaPredicted RBP17.03■□□□□ 0.32
TPM1-202ENST00000288398 EVI5O60447 810 aa17.02■□□□□ 0.32
TPM1-202ENST00000288398 ZYXQ15942 572 aaKnown RBP17.02■□□□□ 0.32
TPM1-202ENST00000288398 ABCB5Q2M3G0 1257 aa17.02■□□□□ 0.32
TPM1-202ENST00000288398 SLC9C2Q5TAH2 1124 aa17.02■□□□□ 0.32
TPM1-202ENST00000288398 CHRDL2Q6WN34 429 aa17.02■□□□□ 0.32
TPM1-202ENST00000288398 FOCADQ5VW36 1801 aa17.02■□□□□ 0.31
TPM1-202ENST00000288398 GOLIM4O00461 696 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 RAB11FIP3O75154 756 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 GLRX3O76003 335 aaKnown RBP17.01■□□□□ 0.31
TPM1-202ENST00000288398 CYP2B6P20813 491 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 CCNA1P78396 465 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 JAG1P78504 1218 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 NECAB2Q7Z6G3 386 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 TRMT44Q8IYL2 757 aaKnown RBP17.01■□□□□ 0.31
TPM1-202ENST00000288398 PAK6Q9NQU5 681 aaPredicted RBP17.01■□□□□ 0.31
TPM1-202ENST00000288398 COG6Q9Y2V7 657 aa17.01■□□□□ 0.31
TPM1-202ENST00000288398 SIPA1L1O43166 1804 aa17■□□□□ 0.31
TPM1-202ENST00000288398 RPTORQ8N122 1335 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L15C9J2P7 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L13C9JLJ4 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L11C9JVI0 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L18D6R9N7 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L22D6RA61 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L17D6RBQ6 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L19D6RCP7 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L20D6RJB6 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 MPHOSPH10O00566 681 aaKnown RBP17■□□□□ 0.31
TPM1-202ENST00000288398 ZKSCAN1P17029 563 aaPredicted RBP17■□□□□ 0.31
TPM1-202ENST00000288398 ERVK-9P63128 1117 aa17■□□□□ 0.31
TPM1-202ENST00000288398 ERVK-24P63145 666 aa17■□□□□ 0.31
TPM1-202ENST00000288398 USP17L24Q0WX57 530 aa17■□□□□ 0.31
TPM1-202ENST00000288398 SHROOM1Q2M3G4 852 aaPredicted RBP17■□□□□ 0.31
TPM1-202ENST00000288398 TATDN1Q6P1N9 297 aa17■□□□□ 0.31
TPM1-202ENST00000288398 UBE2Q1Q7Z7E8 422 aa17■□□□□ 0.31
TPM1-202ENST00000288398 AMOTL1Q8IY63 956 aa17■□□□□ 0.31
TPM1-202ENST00000288398 MCM9Q9NXL9 1143 aa17■□□□□ 0.31
TPM1-202ENST00000288398 CDK5RAP2Q96SN8 1893 aa16.99■□□□□ 0.31
TPM1-202ENST00000288398 PDE6AP16499 860 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 390 ms